Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR1321-201ENST00000637766 79 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AP000560.1-201ENST00000624150 1937 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AL359511.1-201ENST00000402970 211 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AL162578.1-201ENST00000406202 378 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 RNA5SP270-201ENST00000411361 118 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AF274854.1-201ENST00000413236 615 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AC009963.1-201ENST00000417265 157 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AC018868.1-201ENST00000491307 315 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AC010486.1-201ENST00000511793 424 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 RNU5F-2P-201ENST00000516066 82 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 RNU6-323P-201ENST00000521915 107 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AP000763.2-201ENST00000540641 163 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS28Q9UK41 ELOCP5-201ENST00000604924 333 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AL357078.3-201ENST00000607528 618 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS28Q9UK41 AL137847.3-201ENST00000611521 109 ntBASIC2.51□□□□□ -2.01
VPS28Q9UK41 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS28Q9UK41 FER-210ENST00000628534 558 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS28Q9UK41 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS28Q9UK41 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.5□□□□□ -2.01
VPS28Q9UK41 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
VPS28Q9UK41 SNORD73A-201ENST00000386062 65 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 EIF4E2P1-201ENST00000393781 255 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 RNU6-908P-201ENST00000410160 94 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 USP9YP27-201ENST00000418455 438 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AL139413.1-201ENST00000421309 217 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 ERLEC1P1-201ENST00000433806 578 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 RPL32P28-201ENST00000443577 397 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS28Q9UK41 AC011753.1-201ENST00000451001 220 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS28Q9UK41 SNORA4.4-201ENST00000515921 135 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AC034114.1-201ENST00000520293 285 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AC016957.1-201ENST00000534895 309 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 MIR3136-201ENST00000583498 78 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AC018889.1-201ENST00000605372 397 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 RNU6-89P-201ENST00000606519 100 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AL121757.2-201ENST00000611223 313 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AL161423.1-201ENST00000613700 262 ntBASIC2.5□□□□□ -2.01
VPS28Q9UK41 AC121333.1-201ENST00000567488 2709 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 Y_RNA.3-201ENST00000362331 103 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 RNU6-546P-201ENST00000383991 107 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 RNU2-32P-201ENST00000411193 191 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 HMGB3P2-201ENST00000411913 584 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 EDDM3CP-201ENST00000415977 425 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC244670.1-201ENST00000436879 112 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 HMGB1P35-201ENST00000503360 598 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC234781.5-201ENST00000508429 271 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 Y_RNA.655-201ENST00000515919 96 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.49□□□□□ -2.01
VPS28Q9UK41 AP005597.4-201ENST00000526762 229 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC018630.3-201ENST00000542637 96 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC025423.5-201ENST00000550230 219 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AC078814.3-201ENST00000553036 491 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 ZNF519P2-201ENST00000557032 169 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 MIR5692C1-201ENST00000585309 91 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 AL034555.1-201ENST00000604816 211 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 SNORD98-201ENST00000636377 67 ntBASIC2.49□□□□□ -2.01
VPS28Q9UK41 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS28Q9UK41 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VPS28Q9UK41 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS28Q9UK41 RNU6-944P-201ENST00000364023 107 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 SNORD32A-201ENST00000364805 84 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 AL445529.1-201ENST00000398713 389 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 RN7SKP61-201ENST00000410642 295 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 RNA5SP508-201ENST00000411327 119 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 RNU6-1037P-201ENST00000459571 107 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 RN7SL636P-201ENST00000497504 294 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC109635.3-201ENST00000529536 185 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC021269.2-201ENST00000532318 330 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 NDUFA5P6-201ENST00000542110 379 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 HSPE1P4-201ENST00000550617 308 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC010525.2-201ENST00000590920 195 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 AP001836.1-201ENST00000604675 523 ntBASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.48□□□□□ -2.01
VPS28Q9UK41 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS28Q9UK41 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS28Q9UK41 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS28Q9UK41 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS28Q9UK41 AC069528.2-201ENST00000624849 1991 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VPS28Q9UK41 Y_RNA.9-201ENST00000362354 101 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 Y_RNA.167-201ENST00000363735 109 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNY3P3-201ENST00000363816 102 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNU6-522P-201ENST00000364497 107 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNU4-56P-201ENST00000364700 142 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 XGY1-201ENST00000381172 446 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms