Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC135776.4-201ENST00000624300 1904 ntBASIC2.65□□□□□ -1.99
LIMA1Q9UHB6 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1252P-201ENST00000363054 104 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 RNU1-51P-201ENST00000365345 176 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1329P-201ENST00000365664 107 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 RNU6-214P-201ENST00000384130 107 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1222P-201ENST00000384615 107 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AL356776.1-201ENST00000406574 447 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1148P-201ENST00000410992 104 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC009161.1-201ENST00000417306 376 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 snoU13.14-201ENST00000459372 104 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 TRBVA-201ENST00000498804 316 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC008526.1-201ENST00000509149 338 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 SNORA31.15-201ENST00000516771 132 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AF235103.2-201ENST00000525753 346 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 GTF3AP2-201ENST00000557014 266 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC064836.2-201ENST00000609491 462 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AL449363.1-201ENST00000617815 186 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AL159153.1-201ENST00000619688 317 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 AC006504.8-201ENST00000621046 635 ntBASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.64□□□□□ -1.99
LIMA1Q9UHB6 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 RNU6-655P-201ENST00000362858 107 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 RNA5SP125-201ENST00000364843 120 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL359511.1-201ENST00000402970 211 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 CYCSP48-201ENST00000417124 323 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 COTL1P1-201ENST00000422309 375 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 ARL5AP4-201ENST00000430731 512 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 SNAP23P1-201ENST00000433229 246 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 RNU7-26P-201ENST00000458980 63 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1037P-201ENST00000459571 107 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC090515.1-201ENST00000465295 476 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL121594.1-201ENST00000475906 575 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1314P-201ENST00000517139 104 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC087241.2-201ENST00000535801 324 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL121579.1-201ENST00000555129 305 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 RPL30P11-203ENST00000598995 310 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AL713866.2-201ENST00000603579 219 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC009233.1-201ENST00000616477 371 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC092794.2-201ENST00000620933 563 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 AC092608.2-201ENST00000624427 218 ntBASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIMA1Q9UHB6 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1210P-201ENST00000363775 107 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 RNU6-128P-201ENST00000383976 107 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 Y_RNA.414-201ENST00000384011 101 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 RNU6-1072P-201ENST00000384703 107 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 RNU6-443P-201ENST00000384780 107 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 Z92545.1-201ENST00000411782 234 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC003685.2-201ENST00000422795 395 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AIMP1P2-201ENST00000425294 312 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AL513185.2-201ENST00000425543 193 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC018710.1-201ENST00000506509 158 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC092436.3-201ENST00000511788 257 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 TRAV32-201ENST00000553993 340 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC093249.1-201ENST00000567049 203 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC100830.2-201ENST00000581636 240 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC006386.2-201ENST00000624491 75 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 AC012005.1-201ENST00000624575 75 ntBASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.62□□□□□ -1.99
LIMA1Q9UHB6 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
LIMA1Q9UHB6 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
LIMA1Q9UHB6 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
LIMA1Q9UHB6 Y_RNA.86-201ENST00000363020 111 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms