Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 OR2AQ1P-201ENST00000451972 200 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 PCNPP5-201ENST00000452246 481 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.11□□□□□ -1.91
VSX1Q9NZR4 AC107626.1-201ENST00000471084 183 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 SLC25A15P5-201ENST00000508033 253 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 SNORA25.11-201ENST00000515935 105 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 RNY3P15-201ENST00000516297 97 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 RNU6-567P-201ENST00000516746 107 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 SNORA40.15-201ENST00000516884 107 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 AC007375.1-201ENST00000554513 578 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 AC021231.3-201ENST00000558497 370 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 MYL12BP1-201ENST00000569826 507 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 AC097372.5-201ENST00000623665 376 ntBASIC3.11□□□□□ -1.91
VSX1Q9NZR4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.11□□□□□ -1.91
VSX1Q9NZR4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VSX1Q9NZR4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VSX1Q9NZR4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 OR56A5-201ENST00000340110 738 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 MIR30E-201ENST00000362104 92 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 RNU6-238P-201ENST00000363313 106 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 RNY3P4-201ENST00000384428 101 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 MIR544A-201ENST00000384855 91 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 RPL21P1-201ENST00000399532 476 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 DBIP2-201ENST00000419076 262 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 PTGES3P4-201ENST00000426243 356 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 SDAD1P3-201ENST00000427380 333 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 CYCSP4-201ENST00000429682 331 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 RPS15AP5-201ENST00000436276 388 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AC034236.1-201ENST00000469891 373 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 RPL30P1-201ENST00000488676 339 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 SNORA70.18-201ENST00000516696 98 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 RNA5SP380-201ENST00000517190 98 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AP000867.2-201ENST00000532468 320 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 HSPE1P20-201ENST00000538133 289 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 HMGN2P15-201ENST00000585707 270 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 MIR8062-201ENST00000621515 85 ntBASIC3.1□□□□□ -1.91
VSX1Q9NZR4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
VSX1Q9NZR4 AL513302.2-201ENST00000562313 1842 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AL161912.2-201ENST00000565707 3007 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 RNU6-874P-201ENST00000362390 105 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.183-201ENST00000363882 113 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 Y_RNA.358-201ENST00000365491 99 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 RNU6-574P-201ENST00000384265 107 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 RNU6-622P-201ENST00000384272 103 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 MIR134-201ENST00000385258 73 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 RNU6-847P-201ENST00000411115 108 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 CYCSP48-201ENST00000417124 323 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC006539.3-201ENST00000454258 129 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC010401.1-201ENST00000463867 348 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AP001025.1-201ENST00000486139 332 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 RN7SKP282-201ENST00000516824 299 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AP002770.2-201ENST00000543613 532 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 HSPE1P4-201ENST00000550617 308 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC110588.1-201ENST00000559699 137 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC105137.2-201ENST00000569073 466 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC090897.2-201ENST00000581715 130 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC006130.2-201ENST00000586202 326 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 U4.6-201ENST00000621618 127 ntBASIC3.09□□□□□ -1.91
VSX1Q9NZR4 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.09□□□□□ -1.91
VSX1Q9NZR4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RNU5B-2P-201ENST00000363036 113 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RNU6-770P-201ENST00000363929 105 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 Y_RNA.188-201ENST00000363952 111 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RNY3P11-201ENST00000364153 102 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AP002088.1-201ENST00000382740 395 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 SNORA29-201ENST00000384183 140 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RNU1-101P-201ENST00000391171 127 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RPL21P75-201ENST00000396599 483 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RPL21P28-201ENST00000401418 483 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AL590556.1-201ENST00000423231 483 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 MTCO3P29-201ENST00000432119 779 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AC009969.1-201ENST00000438726 172 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 GPM6BP3-201ENST00000442797 145 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RPL39P29-201ENST00000447779 157 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RNU7-87P-201ENST00000459343 62 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 RPL21P39-201ENST00000463605 483 ntBASIC3.08□□□□□ -1.92
VSX1Q9NZR4 CENPBD1P1-201ENST00000464061 469 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms