Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC005786.1-201ENST00000588553 154 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 MZT1P2-201ENST00000604387 248 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 AL121895.2-201ENST00000619558 447 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 MIR6866-201ENST00000638146 69 ntBASIC0.68□□□□□ -2.3
SCN3AQ9NY46 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
SCN3AQ9NY46 Y_RNA.192-201ENST00000363977 102 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 SNORA70.7-201ENST00000384159 133 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 RPS3AP37-201ENST00000419176 745 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 USP9YP11-201ENST00000427537 717 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AL008629.1-201ENST00000438615 184 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC114982.1-201ENST00000469402 321 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC005741.1-201ENST00000511094 432 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 RAB11AP2-201ENST00000545905 639 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 HSPE1P4-201ENST00000550617 308 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 MIR5094-201ENST00000578766 85 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC008507.2-201ENST00000588402 1176 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 DPPA3P3-201ENST00000603842 430 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC099654.5-201ENST00000636479 350 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 SNORA22-201ENST00000383907 134 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 SNORA22C-201ENST00000384614 134 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 MIR146A-201ENST00000385201 99 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 RNU2-39P-201ENST00000410604 198 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 VPS26BP1-201ENST00000417155 755 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC006366.1-201ENST00000422002 759 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC013410.2-201ENST00000422627 201 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 CR769776.1-201ENST00000441254 787 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC132479.1-201ENST00000449160 144 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 NDUFB1P2-201ENST00000449477 176 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 MED28P2-201ENST00000475771 317 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 RNA5SP436-201ENST00000516020 115 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC131235.4-201ENST00000609288 620 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC097478.2-201ENST00000610572 514 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC092106.3-201ENST00000611308 722 ntBASIC0.67□□□□□ -2.3
SCN3AQ9NY46 AC092104.1-201ENST00000497346 1441 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 OR4G2P-201ENST00000328113 903 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 SNORD3E-201ENST00000362899 217 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 Y_RNA.578-201ENST00000390903 88 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC245047.4-201ENST00000433189 144 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC091163.3-201ENST00000518269 1144 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 MIR3146-201ENST00000580367 79 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AL136363.2-201ENST00000604173 851 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC069114.2-201ENST00000604699 304 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AP000654.2-201ENST00000605633 586 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC243829.6-201ENST00000612652 106 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC022513.1-201ENST00000624512 117 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AL356094.1-201ENST00000624663 1212 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 AC103706.2-201ENST00000638080 240 ntBASIC0.66□□□□□ -2.3
SCN3AQ9NY46 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.66□□□□□ -2.3
SCN3AQ9NY46 MIR26B-201ENST00000362251 77 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 SNORD33-201ENST00000362761 85 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 RNU6-1164P-201ENST00000364428 107 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 Y_RNA.374-201ENST00000365606 101 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 RNU6-1222P-201ENST00000384615 107 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 MIR608-201ENST00000384820 100 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 FCF1P10-201ENST00000407590 479 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 RNU6-293P-201ENST00000411259 106 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.65□□□□□ -2.3
SCN3AQ9NY46 JTBP1-201ENST00000441314 247 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 RNU6-1092P-201ENST00000516955 87 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 MTND2P7-201ENST00000521337 640 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 AP003484.1-201ENST00000530974 250 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 AC092451.2-201ENST00000538746 658 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
SCN3AQ9NY46 AC024060.1-201ENST00000607052 494 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 AC106858.1-201ENST00000637497 429 ntBASIC0.65□□□□□ -2.3
SCN3AQ9NY46 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.65□□□□□ -2.31
SCN3AQ9NY46 Y_RNA.99-201ENST00000363138 105 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 RNU6-112P-201ENST00000363599 104 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 SNORA25-201ENST00000384384 134 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 RNU6-1176P-201ENST00000390955 107 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 USP9YP33-201ENST00000412220 421 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 ELOCP17-201ENST00000414751 326 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 ELOCP9-201ENST00000418624 239 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 AC139712.2-201ENST00000424302 339 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 USP9YP35-201ENST00000435696 412 ntBASIC0.65□□□□□ -2.31
SCN3AQ9NY46 snoU13.27-201ENST00000459278 104 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms