Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 uc_338.5-201ENST00000611839 155 ntBASIC1.44□□□□□ -2.18
EXOSC4Q9NPD3 AL159153.1-201ENST00000619688 317 ntBASIC1.44□□□□□ -2.18
EXOSC4Q9NPD3 AC007792.1-201ENST00000623023 402 ntBASIC1.44□□□□□ -2.18
EXOSC4Q9NPD3 Z69720.2-201ENST00000624755 279 ntBASIC1.44□□□□□ -2.18
EXOSC4Q9NPD3 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.44□□□□□ -2.18
EXOSC4Q9NPD3 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.44□□□□□ -2.18
EXOSC4Q9NPD3 AP000648.3-201ENST00000623539 4507 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AL356292.1-201ENST00000283110 373 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 RNU6-546P-201ENST00000383991 107 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 MIR597-201ENST00000384968 97 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 SNORD70.1-201ENST00000391007 85 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 PIGFP2-201ENST00000421400 651 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 MTCO2P34-201ENST00000421994 607 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 USP9YP29-201ENST00000445112 563 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 SNRPGP7-201ENST00000469016 106 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 UBL5P3-201ENST00000475112 231 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC022880.1-201ENST00000534017 973 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 HSBP1P1-201ENST00000555205 166 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 MIR4285-201ENST00000581001 85 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC025449.1-201ENST00000603896 529 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC008945.2-201ENST00000606056 604 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AC013412.1-201ENST00000610687 192 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AL132822.1-201ENST00000617063 513 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 U4.7-201ENST00000638126 106 ntBASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.43□□□□□ -2.18
EXOSC4Q9NPD3 AL390237.1-201ENST00000404226 1415 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 RNU6-428P-201ENST00000362942 107 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 RNU4-91P-201ENST00000364778 135 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 RNU4-48P-201ENST00000365559 182 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AL049545.1-201ENST00000401856 572 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 Y_RNA.597-201ENST00000410463 100 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 EIF4EP2-201ENST00000422816 654 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC092447.3-201ENST00000426027 686 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 MTND4P32-201ENST00000437189 1237 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 MTND1P18-201ENST00000448191 573 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 MTND1P27-201ENST00000451117 902 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 C1DP4-201ENST00000455429 424 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 PRELID3BP1-201ENST00000457142 540 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 snoU13.14-201ENST00000459372 104 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 RPL30P1-201ENST00000488676 339 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC096745.1-201ENST00000509945 370 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC009646.1-201ENST00000510455 318 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 RNU1-41P-201ENST00000516161 162 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 RNU1-48P-201ENST00000516400 162 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 SUB1P2-201ENST00000556401 297 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 MIR4703-201ENST00000577728 79 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 AC009161.2-201ENST00000624626 138 ntBASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
EXOSC4Q9NPD3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNU6-348P-201ENST00000384386 107 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNU6-393P-201ENST00000384475 107 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 SNORA16.2-201ENST00000390991 127 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNA5SP465-201ENST00000391195 109 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC068050.1-201ENST00000394891 380 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNU6-293P-201ENST00000411259 106 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC009310.1-201ENST00000414414 451 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MTCO2P11-201ENST00000431069 680 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC243964.1-201ENST00000441814 261 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 PRPS1P1-201ENST00000445305 876 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC132479.1-201ENST00000449160 144 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 FDX1P2-201ENST00000450769 375 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNU1-98P-201ENST00000458992 160 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MTCO2P6-201ENST00000463134 685 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNU6-377P-201ENST00000515965 102 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MIR449C-201ENST00000516047 92 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 RNU5F-2P-201ENST00000516066 82 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AP002963.1-201ENST00000530590 184 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC007834.2-201ENST00000536310 343 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MIR4528-201ENST00000577763 90 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC008752.3-201ENST00000588113 712 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC121247.2-201ENST00000604776 136 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MIR502-201ENST00000606349 86 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC002044.1-201ENST00000606707 158 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 AC099842.1-201ENST00000619919 596 ntBASIC1.41□□□□□ -2.18
EXOSC4Q9NPD3 MIR1248-201ENST00000629190 106 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms