Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC123912.5-201ENST00000605470 343 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AL137847.3-201ENST00000611521 109 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.804-201ENST00000615262 101 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 AL353997.5-201ENST00000618886 171 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 MTND4P12-201ENST00000498999 1377 ntBASIC2.44□□□□□ -2.02
UPF3AQ9H1J1 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC138393.1-203ENST00000327086 343 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 EIF4E2P1-201ENST00000393781 255 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC098614.2-201ENST00000426040 255 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 BRK1P2-201ENST00000442875 223 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC092001.1-201ENST00000453012 261 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC103851.1-201ENST00000506833 274 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 RN7SKP256-201ENST00000517201 314 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 MIR5692A1-201ENST00000580523 69 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 MIR3609-201ENST00000582661 80 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 C8orf59P2-201ENST00000603441 271 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AL357078.3-201ENST00000607528 618 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 AC010378.1-201ENST00000619270 362 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 MIR6132-201ENST00000622083 109 ntBASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.43□□□□□ -2.02
UPF3AQ9H1J1 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 MIR412-201ENST00000362142 91 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 SNORA67.1-201ENST00000364749 141 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 SET-203ENST00000372688 801 ntTSL 2 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 MIR518D-201ENST00000385014 87 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.623-201ENST00000411128 95 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AC009161.1-201ENST00000417306 376 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AL445646.1-201ENST00000431784 216 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 NDUFA5P4-201ENST00000436704 385 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 HMGB1P18-201ENST00000438801 619 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AL714022.1-201ENST00000439897 151 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 NDUFB1P2-201ENST00000449477 176 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AMD1P1-201ENST00000457220 922 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 RPS27AP10-201ENST00000496103 208 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 CKS1BP2-201ENST00000497342 240 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 SNORA19.2-201ENST00000516013 114 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 MIR892C-201ENST00000516410 77 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1183P-201ENST00000517054 60 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 APOOP1-201ENST00000604695 592 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 MTND4LP5-201ENST00000605152 292 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 AC104985.2-201ENST00000620598 500 ntBASIC2.42□□□□□ -2.02
UPF3AQ9H1J1 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.142-201ENST00000363491 102 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.263-201ENST00000364659 114 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.324-201ENST00000365165 102 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.529-201ENST00000384586 119 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 RNU6-1009P-201ENST00000390996 107 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 SNORA26.9-201ENST00000391322 122 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 MIR888-201ENST00000401186 77 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 RNU2-2P-201ENST00000410396 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC098831.1-201ENST00000440661 216 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC007677.1-201ENST00000445757 515 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 SNORA31.11-201ENST00000516528 139 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 RNU1-104P-201ENST00000517280 175 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AP005597.4-201ENST00000526762 229 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AP000889.2-201ENST00000532684 490 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AP000763.2-201ENST00000540641 163 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 RPS3AP23-202ENST00000574601 686 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.15-201ENST00000611544 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.16-201ENST00000613119 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC025253.1-201ENST00000613623 543 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.12-201ENST00000613778 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.20-201ENST00000613956 192 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.9-201ENST00000615427 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.11-201ENST00000616345 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.2-201ENST00000616535 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.3-201ENST00000617785 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms