Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.29□□□□□ -1.72
ZKSCAN3Q9BRR0 IGHVIII-44-202ENST00000636235 289 ntBASIC4.29□□□□□ -1.72
ZKSCAN3Q9BRR0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ZKSCAN3Q9BRR0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ZKSCAN3Q9BRR0 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.29□□□□□ -1.72
ZKSCAN3Q9BRR0 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-858P-201ENST00000362436 107 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 RNU6-600P-201ENST00000362524 99 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 SNORD9-201ENST00000362566 104 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 RN7SKP61-201ENST00000410642 295 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 NDUFS5P4-201ENST00000412983 318 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AL358075.3-201ENST00000426289 226 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 Y_RNA.638-201ENST00000459374 113 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC091959.1-201ENST00000495857 238 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC074198.2-201ENST00000508153 258 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 RN7SKP209-201ENST00000516888 304 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 RNA5SP143-201ENST00000516936 115 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC008749.1-201ENST00000597650 306 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 MZT1P2-201ENST00000604387 248 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC011921.3-201ENST00000605540 361 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 MIR486-1-201ENST00000612171 68 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 AC010733.2-201ENST00000589496 5702 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 MAPK10-373ENST00000641983 6772 ntBASIC4.28□□□□□ -1.72
ZKSCAN3Q9BRR0 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 FAM35BP-202ENST00000497389 3337 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.136-201ENST00000363444 102 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-884P-201ENST00000363889 107 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-1175P-201ENST00000365200 107 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR544A-201ENST00000384855 91 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 HMGN2P8-201ENST00000391458 268 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 ATP5A1P2-201ENST00000412323 255 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 VDAC1P3-201ENST00000434069 851 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 SNRPGP7-201ENST00000469016 106 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 RPS4XP22-201ENST00000480755 780 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORA40.9-201ENST00000515895 93 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORA27.4-201ENST00000516650 95 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 AL391261.3-201ENST00000557194 520 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 U6.106-201ENST00000636360 105 ntBASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
ZKSCAN3Q9BRR0 AC090740.1-201ENST00000623193 2262 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-50P-201ENST00000362356 103 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-961P-201ENST00000363893 105 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP189-201ENST00000364920 115 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 SNORD113-1-201ENST00000365321 69 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP240-201ENST00000365355 128 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNY1P5-201ENST00000383890 115 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.418-201ENST00000384029 102 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 Y_RNA.446-201ENST00000384178 104 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 MIR670-201ENST00000390142 98 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 U3.19-201ENST00000390893 196 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 FTH1P15-201ENST00000406984 280 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNU6-651P-201ENST00000411040 105 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RPL23AP36-201ENST00000413895 458 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AL606753.1-201ENST00000427435 87 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 POLR2KP2-201ENST00000438155 177 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC023141.12-201ENST00000512399 199 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RN7SKP83-201ENST00000516512 178 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 RNA5SP468-201ENST00000516782 93 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC026403.1-201ENST00000518938 295 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC022559.1-201ENST00000520905 205 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AL590240.4-201ENST00000616908 390 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC006001.4-201ENST00000622243 395 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 AC021753.1-201ENST00000635724 168 ntBASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
ZKSCAN3Q9BRR0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms