Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC010297.1-201ENST00000623948 149 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC080128.1-201ENST00000474389 1917 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AL355596.1-201ENST00000565399 3996 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 MTND4P23-201ENST00000447723 1363 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 RNU6-461P-201ENST00000364195 107 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 SNORD81.2-201ENST00000365153 76 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
NKX3-1Q99801 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
NKX3-1Q99801 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
NKX3-1Q99801 RNU6-128P-201ENST00000383976 107 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 RNU6-1083P-201ENST00000384022 107 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 MIR196B-201ENST00000384852 84 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AL030996.1-201ENST00000411430 235 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC138623.1-201ENST00000418060 216 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC097463.2-201ENST00000421074 142 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 MTND4LP11-201ENST00000422184 280 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 UBE2V1P4-201ENST00000425374 344 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC098614.3-201ENST00000438957 440 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AL353572.1-201ENST00000442490 417 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 MTND4P18-201ENST00000447010 465 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC012308.1-201ENST00000451232 178 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 RNU6-1037P-201ENST00000459571 107 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 RPL9P9-202ENST00000466501 579 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC091951.2-201ENST00000500762 203 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC096745.1-201ENST00000509945 370 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 SMURF2P1-201ENST00000514992 481 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 SNORA31.18-201ENST00000517043 134 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 RNA5SP454-201ENST00000517231 127 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC079598.5-201ENST00000547460 117 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC103810.1-201ENST00000579873 453 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 uc_338.15-201ENST00000615470 191 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AC092794.2-201ENST00000620933 563 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 AL359854.1-201ENST00000614203 1594 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.26□□□□□ -2.05
NKX3-1Q99801 Z75746.1-201ENST00000440243 2080 ntBASIC2.26□□□□□ -2.05
NKX3-1Q99801 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
NKX3-1Q99801 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
NKX3-1Q99801 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 Y_RNA.510-201ENST00000384511 114 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 RPL30P4-201ENST00000429309 333 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC236972.1-201ENST00000433225 199 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 USP9YP8-201ENST00000441913 500 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 AL441985.1-201ENST00000457727 251 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC130509.1-201ENST00000464158 433 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 SNRPGP7-201ENST00000469016 106 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC091874.1-201ENST00000511402 339 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC046134.1-201ENST00000514454 666 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AP005639.2-201ENST00000527592 928 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 MIR4319-201ENST00000577285 85 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 RPL12P50-201ENST00000603116 116 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 AC006023.1-201ENST00000603944 259 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 RNU6-91P-201ENST00000607774 107 ntBASIC2.25□□□□□ -2.05
NKX3-1Q99801 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.25□□□□□ -2.05
NKX3-1Q99801 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.24□□□□□ -2.05
NKX3-1Q99801 DEFA7P-201ENST00000382676 285 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 RNU6-1013P-201ENST00000384180 107 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 RNU6-306P-201ENST00000384617 107 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 RNA5SP390-201ENST00000410191 113 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 SNAP23P1-201ENST00000433229 246 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 RPL39P29-201ENST00000447779 157 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 MTND3P10-201ENST00000450967 341 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 RNU6-612P-201ENST00000516909 102 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 COX6CP5-201ENST00000527162 228 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AC010186.2-204ENST00000537668 439 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.24□□□□□ -2.05
NKX3-1Q99801 MIR3199-1-201ENST00000582434 88 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 MIR3616-201ENST00000584070 92 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 BNIP3P16-201ENST00000589779 534 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AC060766.3-201ENST00000591442 263 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
NKX3-1Q99801 MIR3976-201ENST00000606807 139 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 HAUS6P2-201ENST00000433254 2404 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 AL136360.1-201ENST00000503377 1900 ntBASIC2.24□□□□□ -2.05
NKX3-1Q99801 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
NKX3-1Q99801 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.23□□□□□ -2.05
NKX3-1Q99801 RNU1-72P-201ENST00000362976 153 ntBASIC2.23□□□□□ -2.05
NKX3-1Q99801 SNORD114-19-201ENST00000363072 75 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms