Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORA31.23-201ENST00000517219 133 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 AP003465.2-201ENST00000602571 373 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 MIR98-201ENST00000606724 119 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 AC090517.2-201ENST00000614966 680 ntBASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.97□□□□□ -2.09
ZNF540Q8NDQ6 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 SNORD3E-201ENST00000362899 217 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 RNU5A-6P-201ENST00000384136 116 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 MIR558-201ENST00000384920 94 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 SNORA48.3-201ENST00000391081 134 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 BTF3P7-201ENST00000407097 488 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 MIR548F1-201ENST00000408667 84 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC074117.2-201ENST00000417130 397 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 ELOCP4-201ENST00000420090 333 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 MED13P1-201ENST00000428342 171 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 MTATP6P16-201ENST00000434543 526 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC092473.1-201ENST00000441098 221 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC096638.1-201ENST00000444678 216 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AL136380.1-201ENST00000447970 162 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 RPS3AP17-201ENST00000472594 777 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AP001025.1-201ENST00000486139 332 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC092436.1-201ENST00000506450 503 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC011352.1-201ENST00000512300 793 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 SNORD27.1-201ENST00000516319 72 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.687-201ENST00000516558 91 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC087883.1-201ENST00000551882 391 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 MIR5692A1-201ENST00000580523 69 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AL158827.2-201ENST00000602494 330 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC009314.1-201ENST00000603871 304 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC025449.1-201ENST00000603896 529 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC072046.2-201ENST00000618366 268 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AL359880.1-201ENST00000621879 266 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 MIR6132-201ENST00000622083 109 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AC124864.2-201ENST00000624736 186 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 AL691447.3-201ENST00000635020 330 ntBASIC1.96□□□□□ -2.1
ZNF540Q8NDQ6 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-108P-201ENST00000365558 107 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 MIR1-2-201ENST00000384961 85 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 CISD1P1-201ENST00000393907 327 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 MIR1283-2-201ENST00000408621 87 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 RNU2-48P-201ENST00000410694 191 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-387P-201ENST00000411331 105 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AL590556.1-201ENST00000423231 483 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 MTND1P1-201ENST00000445453 368 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 FDX1P2-201ENST00000450769 375 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 SRRM1P2-201ENST00000464531 1192 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AC107401.1-201ENST00000503426 685 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-123P-201ENST00000516163 102 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-506P-201ENST00000516553 94 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 SNORA43.2-201ENST00000516652 128 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 SNORA44.1-201ENST00000517031 108 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AC007684.1-201ENST00000609671 477 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AC017083.3-201ENST00000609955 700 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 AL132822.1-201ENST00000617063 513 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 MIR7843-201ENST00000622274 79 ntBASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.95□□□□□ -2.1
ZNF540Q8NDQ6 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.1-201ENST00000352915 104 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.372-201ENST00000365599 102 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.381-201ENST00000365666 102 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.409-201ENST00000383990 98 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 MIR221-201ENST00000385135 110 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 RNU11-3P-201ENST00000391111 133 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 MTCO3P40-201ENST00000392516 676 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 RNU2-39P-201ENST00000410604 198 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 RNU2-8P-201ENST00000410727 190 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 RNU4-55P-201ENST00000410731 137 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AC114491.1-201ENST00000416095 246 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AC073464.1-201ENST00000429823 534 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 USP9YP28-201ENST00000435142 589 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 RNA5SP57-201ENST00000459463 123 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 GNAI2P1-201ENST00000541815 315 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 HSBP1P1-201ENST00000555205 166 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 SUB1P2-201ENST00000556401 297 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 MIR3935-201ENST00000583472 104 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AC107304.1-201ENST00000604229 296 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms