Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RNU1-35P-201ENST00000362782 153 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 SNORA71.1-201ENST00000364523 117 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 SNORA70.4-201ENST00000365509 134 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 Y_RNA.364-201ENST00000365532 101 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 NDUFS5P4-201ENST00000412983 318 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 MTND3P9-201ENST00000429526 346 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AL353997.1-201ENST00000432936 108 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 RPS29P6-201ENST00000438196 145 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 RPL17P19-201ENST00000489069 552 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC114801.2-201ENST00000503825 781 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 SNORA43.2-201ENST00000516652 128 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC009812.2-201ENST00000517657 457 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC010186.2-204ENST00000537668 439 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 SUB1P3-201ENST00000564581 315 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 HMGN2P15-201ENST00000585707 270 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC020895.1-201ENST00000595362 272 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC024153.1-201ENST00000603103 365 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC136443.5-201ENST00000603741 370 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC005046.1-201ENST00000608515 625 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC091925.1-201ENST00000623204 462 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 AC233263.6-201ENST00000631132 1963 ntBASIC2.7□□□□□ -1.98
CLIP4Q8N3C7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RNA5SP374-201ENST00000362939 125 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RNU6-527P-201ENST00000363425 104 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 Y_RNA.158-201ENST00000363651 101 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 SNORA38.1-201ENST00000364172 131 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RNA5SP387-201ENST00000364226 106 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RNU6-336P-201ENST00000364891 107 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RPS29P13-201ENST00000402041 169 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AL591034.2-201ENST00000402839 359 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 NUP35P1-201ENST00000422734 947 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 MRPS18CP6-201ENST00000423587 223 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 CYCSP32-201ENST00000440548 321 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AP000705.1-201ENST00000454567 350 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RPL26P9-201ENST00000457466 433 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC128713.1-201ENST00000471495 306 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RPS27AP10-201ENST00000496103 208 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 Y_RNA.720-201ENST00000517166 92 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AP004607.1-201ENST00000524456 203 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC004486.1-201ENST00000546846 233 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 NACAP3-201ENST00000552100 481 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AL451007.1-201ENST00000595491 289 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC092447.9-201ENST00000603395 144 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC005014.2-201ENST00000607795 599 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 MIR6134-201ENST00000617606 109 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CLIP4Q8N3C7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 AL355596.1-201ENST00000565399 3996 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RNU6-942P-201ENST00000363002 107 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RNY1P16-201ENST00000363063 111 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RNU6-99P-201ENST00000364721 107 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 Y_RNA.533-201ENST00000384596 114 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 MIR181A2-201ENST00000384863 110 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 HMGN2P35-201ENST00000412164 270 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RPL21P40-201ENST00000428586 483 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 AC099799.1-201ENST00000439809 192 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 AC006026.2-201ENST00000457376 180 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RN7SL297P-201ENST00000483161 293 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RPL23AP49-201ENST00000492925 468 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 RNU6-1046P-201ENST00000516538 107 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 MIR4680-201ENST00000580906 66 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 AL158827.2-201ENST00000602494 330 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 AP001836.1-201ENST00000604675 523 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 HMGB1P24-202ENST00000615653 685 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 DLEU1_1.1-201ENST00000618107 190 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 AL691447.3-201ENST00000635020 330 ntBASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CLIP4Q8N3C7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 MAPK10-266ENST00000641066 6555 ntBASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 MTND5P1-201ENST00000445440 1375 ntBASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 RNU6-227P-201ENST00000362865 103 ntBASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 RNU6-105P-201ENST00000363909 104 ntBASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 Y_RNA.314-201ENST00000365114 102 ntBASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 Y_RNA.333-201ENST00000365274 102 ntBASIC2.67□□□□□ -1.98
CLIP4Q8N3C7 RNU1-115P-201ENST00000365329 160 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms