Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SNORA67.3-201ENST00000384366 140 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 SNORA64-201ENST00000384674 134 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNA5SP219-201ENST00000390940 113 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AL591034.2-201ENST00000402839 359 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNA5SP390-201ENST00000410191 113 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 VN1R108P-201ENST00000431580 830 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AL121601.2-201ENST00000438019 707 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AL161788.1-201ENST00000441805 169 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC007969.2-201ENST00000441891 191 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 USP9YP8-201ENST00000441913 500 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC096638.1-201ENST00000444678 216 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 MTCO2P7-201ENST00000446518 666 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AL031274.1-201ENST00000450334 232 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNU6-261P-201ENST00000459506 102 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC087884.1-201ENST00000469738 328 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC109329.1-201ENST00000518744 317 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC090115.3-201ENST00000553218 849 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 MIR4424-201ENST00000585257 86 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC012493.3-201ENST00000604494 112 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 Z82243.1-201ENST00000609432 473 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 HULC.1-201ENST00000612720 240 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC124864.2-201ENST00000624736 186 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 AC090517.3-201ENST00000625170 141 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SKA3Q8IX90 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
SKA3Q8IX90 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
SKA3Q8IX90 RNU1-23P-201ENST00000363361 144 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 RNU6-529P-201ENST00000363383 104 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 U3.13-201ENST00000364804 214 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 RNU6-336P-201ENST00000364891 107 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 RNU6-780P-201ENST00000391030 104 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SKA3Q8IX90 MTND1P1-201ENST00000445453 368 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 snoU13.14-201ENST00000459372 104 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 SRRM1P2-201ENST00000464531 1192 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 TRBV12-1-201ENST00000479785 344 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 RN7SL274P-201ENST00000492268 272 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC079140.5-201ENST00000507882 310 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 RNA5SP401-201ENST00000515920 127 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 RNU6-377P-201ENST00000515965 102 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 SNORA48.11-201ENST00000517015 89 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC069113.1-201ENST00000517763 267 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC109479.2-201ENST00000517842 174 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 CYCSP26-201ENST00000534107 320 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 IMMP1LP2-201ENST00000552954 492 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC103987.3-201ENST00000582071 292 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC091135.1-201ENST00000585943 307 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC107304.1-201ENST00000604229 296 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AL670379.2-201ENST00000604983 252 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC008121.3-201ENST00000618726 433 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 AC007792.1-201ENST00000623023 402 ntBASIC1.83□□□□□ -2.12
SKA3Q8IX90 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC002543.1-201ENST00000299783 1954 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 Y_RNA.318-201ENST00000365131 97 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 RNU4-20P-201ENST00000365601 151 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 RNU1-148P-201ENST00000384472 162 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 Y_RNA.517-201ENST00000384551 106 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 MIR95-201ENST00000385072 81 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 SUMO2P12-201ENST00000405924 140 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AL117339.3-201ENST00000418733 162 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC124916.1-201ENST00000444020 547 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 RPL39P29-201ENST00000447779 157 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AL021397.1-201ENST00000451806 248 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 RNU6-1038P-201ENST00000516516 104 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 Y_RNA.693-201ENST00000516641 110 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 RNU6-586P-201ENST00000517265 104 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 AC245505.1-201ENST00000556398 224 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 MIR3941-201ENST00000582572 103 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 VN1R80P-201ENST00000597126 338 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 MIR219B-201ENST00000637023 88 ntBASIC1.82□□□□□ -2.12
SKA3Q8IX90 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.82□□□□□ -2.12
SKA3Q8IX90 Y_RNA.41-201ENST00000362646 102 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 RNU4-66P-201ENST00000365199 138 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 Y_RNA.481-201ENST00000384373 102 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 RNU6-1274P-201ENST00000384557 107 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 MIR544A-201ENST00000384855 91 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 RN7SKP158-201ENST00000410453 326 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 RNU6-1245P-201ENST00000411130 106 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AIMP1P2-201ENST00000425294 312 ntBASIC1.81□□□□□ -2.12
SKA3Q8IX90 AL589823.1-201ENST00000429577 183 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms