Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.83□□□□□ -1.8
SF3A1Q15459 AC073346.2-201ENST00000624724 2058 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 MTCO1P12-201ENST00000414273 1543 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 SNORA41-201ENST00000384675 132 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.82□□□□□ -1.8
SF3A1Q15459 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.82□□□□□ -1.8
SF3A1Q15459 CST9LP2-201ENST00000437612 320 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.82□□□□□ -1.8
SF3A1Q15459 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.82□□□□□ -1.8
SF3A1Q15459 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.82□□□□□ -1.8
SF3A1Q15459 AC068781.1-201ENST00000488231 618 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 HMGB1P35-201ENST00000503360 598 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 AC021146.2-201ENST00000504736 556 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SF3A1Q15459 MIR5696-201ENST00000578474 85 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 uc_338.1-201ENST00000612113 180 ntBASIC3.82□□□□□ -1.8
SF3A1Q15459 MIR369-201ENST00000362155 70 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 snoU2_19.1-201ENST00000362361 80 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 Y_RNA.394-201ENST00000383942 103 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.81□□□□□ -1.8
SF3A1Q15459 AL358453.1-201ENST00000422522 250 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AIMP1P2-201ENST00000425294 312 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 MTND1P14-201ENST00000427400 950 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 MTCO2P12-201ENST00000427426 682 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 MICF-203ENST00000432679 129 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AL353705.1-201ENST00000433468 480 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 RNU6-470P-201ENST00000515954 104 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 SNORA74D-201ENST00000516404 141 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 RNU6-567P-201ENST00000516746 107 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AC026241.1-201ENST00000517873 2142 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AC104027.1-201ENST00000521887 300 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.81□□□□□ -1.8
SF3A1Q15459 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SF3A1Q15459 AL590705.4-201ENST00000532209 134 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 MIR5571-201ENST00000577998 113 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 AC069294.1-201ENST00000608397 350 ntBASIC3.81□□□□□ -1.8
SF3A1Q15459 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SF3A1Q15459 RNU1-70P-201ENST00000362618 164 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 RNA5SP383-201ENST00000362934 120 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 RNU6-595P-201ENST00000363944 107 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 RNU4-9P-201ENST00000364951 139 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 MIR218-2-201ENST00000385006 110 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 RNU6-700P-201ENST00000391043 107 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 Z96811.1-201ENST00000445880 108 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.8□□□□□ -1.8
SF3A1Q15459 snoU13.6-201ENST00000458785 104 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 AC087477.1-201ENST00000465747 340 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 RPL17P19-201ENST00000489069 552 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 AC074250.1-201ENST00000511117 192 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 RN7SKP272-201ENST00000516988 232 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.8□□□□□ -1.8
SF3A1Q15459 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.8□□□□□ -1.8
SF3A1Q15459 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.8□□□□□ -1.8
SF3A1Q15459 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SF3A1Q15459 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.8□□□□□ -1.8
SF3A1Q15459 CYP2C61P-201ENST00000604072 290 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 Z98751.3-201ENST00000604447 521 ntBASIC3.8□□□□□ -1.8
SF3A1Q15459 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SF3A1Q15459 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
SF3A1Q15459 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.79□□□□□ -1.8
SF3A1Q15459 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SF3A1Q15459 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SF3A1Q15459 AL353743.1-202ENST00000431724 1695 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 RNU6-461P-201ENST00000364195 107 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 MIR183-201ENST00000384958 110 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 SNORA26.3-201ENST00000391119 136 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 CBX3P9-201ENST00000402326 552 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 AL590556.1-201ENST00000423231 483 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.79□□□□□ -1.8
SF3A1Q15459 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.79□□□□□ -1.8
SF3A1Q15459 RN7SL293P-201ENST00000481765 281 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 RPL23AP75-201ENST00000491601 451 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 AF186996.7-201ENST00000492781 209 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 SCARNA13-201ENST00000516672 275 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 AC007458.1-201ENST00000542812 373 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.79□□□□□ -1.8
SF3A1Q15459 SCARNA4-201ENST00000629045 128 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 AL450472.1-202ENST00000637286 180 ntBASIC3.79□□□□□ -1.8
SF3A1Q15459 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.79□□□□□ -1.8
SF3A1Q15459 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.79□□□□□ -1.8
SF3A1Q15459 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SF3A1Q15459 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SF3A1Q15459 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
SF3A1Q15459 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
SF3A1Q15459 MTND4P27-201ENST00000450813 1354 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SF3A1Q15459 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SF3A1Q15459 SNORD56.3-201ENST00000363507 71 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.78□□□□□ -1.8
SF3A1Q15459 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.78□□□□□ -1.8
SF3A1Q15459 MTCO3P29-201ENST00000432119 779 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 Z82188.1-201ENST00000436709 154 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 AC115115.1-201ENST00000449927 248 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 CYCSP35-201ENST00000451978 304 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 RN7SKP210-201ENST00000459176 261 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.78□□□□□ -1.8
SF3A1Q15459 Y_RNA.701-201ENST00000516812 110 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 AP000889.1-201ENST00000530968 660 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 MIR3200-201ENST00000580767 85 ntBASIC3.78□□□□□ -1.8
SF3A1Q15459 AL078605.1-201ENST00000603529 500 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms