Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC007560.1-201ENST00000426912 237 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AL591623.2-201ENST00000449978 222 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.27□□□□□ -1.89
COL4A3Q01955 AL138752.1-201ENST00000452964 351 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC079354.2-201ENST00000453523 154 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RNU4-71P-201ENST00000516258 113 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RNU6-1256P-201ENST00000516539 103 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 RNU6-572P-201ENST00000516724 80 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 Y_RNA.706-201ENST00000516933 99 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC107934.2-201ENST00000518653 310 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC010186.2-204ENST00000537668 439 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AP002770.2-201ENST00000543613 532 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC093023.1-201ENST00000547375 507 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.27□□□□□ -1.89
COL4A3Q01955 MIR4425-201ENST00000580572 84 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 BX284668.6-201ENST00000606899 438 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 U2.22-201ENST00000636441 106 ntBASIC3.27□□□□□ -1.89
COL4A3Q01955 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A3Q01955 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A3Q01955 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.26□□□□□ -1.89
COL4A3Q01955 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.26□□□□□ -1.89
COL4A3Q01955 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A3Q01955 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.26□□□□□ -1.89
COL4A3Q01955 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A3Q01955 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
COL4A3Q01955 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
COL4A3Q01955 BTF3L4P2-201ENST00000392798 346 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 AL591043.1-201ENST00000432461 424 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A3Q01955 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A3Q01955 snoU109.2-201ENST00000459316 135 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 S100A11P1-201ENST00000477525 312 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 TRBV12-1-201ENST00000479785 344 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 AC021205.2-201ENST00000480069 347 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 AC139453.3-201ENST00000493276 369 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A3Q01955 AP004371.1-201ENST00000525240 214 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A3Q01955 SYF2P1-201ENST00000550658 413 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A3Q01955 RMST_8.1-201ENST00000610287 165 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.26□□□□□ -1.89
COL4A3Q01955 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.26□□□□□ -1.89
COL4A3Q01955 AL136360.1-201ENST00000503377 1900 ntBASIC3.26□□□□□ -1.89
COL4A3Q01955 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL4A3Q01955 Y_RNA.150-201ENST00000363562 102 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 Y_RNA.270-201ENST00000364693 104 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 RNU5E-7P-201ENST00000365290 117 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 SNORA18.3-201ENST00000384122 132 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 Y_RNA.466-201ENST00000384294 113 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 RNU6-166P-201ENST00000384371 107 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 MRPL35P1-201ENST00000404272 572 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 AL513477.1-202ENST00000417061 214 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL4A3Q01955 AL135938.1-201ENST00000443141 297 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 AL392103.1-201ENST00000447000 198 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 snoU13.30-201ENST00000458951 104 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 MED28P2-201ENST00000475771 317 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A3Q01955 ANXA2P1-201ENST00000505539 926 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 RNU1-143P-201ENST00000516296 146 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 SNORA31.19-201ENST00000517079 126 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 HMGB1P14-201ENST00000557424 591 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 AC005046.1-201ENST00000608515 625 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 U1.23-201ENST00000610293 146 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 RNU1-68P-201ENST00000615382 146 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 FTX_2.1-201ENST00000618816 94 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 U1.39-201ENST00000621562 146 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 DDX18P3-201ENST00000404856 2007 ntBASIC3.25□□□□□ -1.89
COL4A3Q01955 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
COL4A3Q01955 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A3Q01955 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL4A3Q01955 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A3Q01955 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
COL4A3Q01955 AC108206.1-201ENST00000570186 4159 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 MIR423-201ENST00000362201 94 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 SNORD81.1-201ENST00000363064 77 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 Y_RNA.123-201ENST00000363338 102 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 RNU6-280P-201ENST00000364145 104 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 Y_RNA.269-201ENST00000364685 89 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 Y_RNA.297-201ENST00000364950 91 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC007919.1-201ENST00000429380 217 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC108938.1-201ENST00000451204 136 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC092798.1-201ENST00000458542 409 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 RPL7P47-201ENST00000497299 556 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 SNORA31.8-201ENST00000516327 108 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 RN7SKP272-201ENST00000516988 232 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A3Q01955 AC136932.1-201ENST00000574771 208 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 MIR4319-201ENST00000577285 85 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms