Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL161670.1-201ENST00000554348 137 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL669831.4-202ENST00000590817 238 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL365434.2-201ENST00000607979 234 ntBASIC2□□□□□ -2.09
COL4A4P53420 AC006157.1-201ENST00000611750 366 ntBASIC2□□□□□ -2.09
COL4A4P53420 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2□□□□□ -2.09
COL4A4P53420 uc_338.9-201ENST00000617424 182 ntBASIC2□□□□□ -2.09
COL4A4P53420 PVT1_3.1-201ENST00000620853 95 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL159972.1-201ENST00000625150 448 ntBASIC2□□□□□ -2.09
COL4A4P53420 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2□□□□□ -2.09
COL4A4P53420 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
COL4A4P53420 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2□□□□□ -2.09
COL4A4P53420 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
COL4A4P53420 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2□□□□□ -2.09
COL4A4P53420 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2□□□□□ -2.09
COL4A4P53420 AC103988.1-201ENST00000566382 2177 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.167-201ENST00000363735 109 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.176-201ENST00000363815 109 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 RNU6-853P-201ENST00000364306 107 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 RNU4-20P-201ENST00000365601 151 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 SNORD116-11-201ENST00000383882 92 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 MIR649-201ENST00000384843 97 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.618-201ENST00000410949 107 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 RNU6-193P-201ENST00000410977 107 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 PRELID3BP11-201ENST00000414230 479 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.99□□□□□ -2.09
COL4A4P53420 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 EZH2P1-201ENST00000431167 291 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC104308.1-201ENST00000454621 333 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC010655.3-201ENST00000478818 450 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC098591.2-201ENST00000510152 315 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AP005902.1-201ENST00000521358 186 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AP001804.3-201ENST00000525146 880 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.99□□□□□ -2.09
COL4A4P53420 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC026470.2-201ENST00000561492 181 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 MIR4424-201ENST00000585257 86 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 MIR3942-201ENST00000585264 109 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC005357.1-201ENST00000588399 301 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 GLUD1P4-201ENST00000590914 418 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AL049779.4-201ENST00000604500 156 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A4P53420 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A4P53420 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.99□□□□□ -2.09
COL4A4P53420 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A4P53420 API5P2-201ENST00000397055 1498 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 RNU6-522P-201ENST00000364497 107 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 RNY4P16-201ENST00000364768 94 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.378-201ENST00000365652 113 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.476-201ENST00000384347 108 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.527-201ENST00000384573 102 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 SNORD37.1-201ENST00000390968 65 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 SSXP10-201ENST00000402595 565 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 PRRC2CP1-201ENST00000404428 159 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 MCFD2P1-201ENST00000417812 300 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC009965.2-201ENST00000425328 970 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AL358075.3-201ENST00000426289 226 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 MTATP6P16-201ENST00000434543 526 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC020550.1-201ENST00000447385 163 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC007395.1-201ENST00000451333 677 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 SNORD121B-201ENST00000458838 81 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.635-201ENST00000459041 101 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 U8.20-201ENST00000459445 131 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC104563.1-201ENST00000476147 376 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 Y_RNA.654-201ENST00000497848 106 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 PTP4A1P6-201ENST00000531034 478 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC060771.1-201ENST00000582031 164 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.99□□□□□ -2.09
COL4A4P53420 AF038458.1-201ENST00000588406 262 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 AC073539.2-201ENST00000597113 165 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
COL4A4P53420 AL162373.1-201ENST00000620433 407 ntBASIC1.99□□□□□ -2.09
COL4A4P53420 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.99□□□□□ -2.09
COL4A4P53420 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC1.98□□□□□ -2.09
COL4A4P53420 MTND5P30-201ENST00000452896 1731 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
COL4A4P53420 RNU6-552P-201ENST00000362869 119 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNU5E-6P-201ENST00000365574 115 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNU6-444P-201ENST00000383988 108 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNU6-784P-201ENST00000384330 106 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 RNU6-921P-201ENST00000384361 107 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 Y_RNA.493-201ENST00000384422 102 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 MIR514A2-201ENST00000385131 88 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 MIR514A3-201ENST00000385132 88 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 MIR92A2-201ENST00000385299 75 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AC016769.3-201ENST00000396562 315 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.98□□□□□ -2.09
COL4A4P53420 AL590233.1-201ENST00000430017 456 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 PRPS1P1-201ENST00000445305 876 ntBASIC1.98□□□□□ -2.09
COL4A4P53420 AL031659.1-201ENST00000447075 539 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms