Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP000907.4-201ENST00000604143 237 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AL670379.10-201ENST00000604330 253 ntBASIC2.88□□□□□ -1.95
CTCFP49711 APOOP1-201ENST00000604695 592 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AL670379.2-201ENST00000604983 252 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AL670379.9-201ENST00000605428 253 ntBASIC2.88□□□□□ -1.95
CTCFP49711 Z82243.1-201ENST00000609432 473 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AL160394.1-201ENST00000624765 724 ntBASIC2.88□□□□□ -1.95
CTCFP49711 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CTCFP49711 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-37P-201ENST00000362692 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-78P-201ENST00000362897 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNA5SP393-201ENST00000363423 117 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-11P-201ENST00000364234 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-25P-201ENST00000383873 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-1-201ENST00000383898 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-48P-201ENST00000384161 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-36P-201ENST00000384172 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-4P-201ENST00000384205 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-5P-201ENST00000384238 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-3P-201ENST00000384314 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-16P-201ENST00000384385 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-15P-201ENST00000384534 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-2-201ENST00000384627 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-29P-201ENST00000384637 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-9-201ENST00000384776 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-33P-201ENST00000384793 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 Y_RNA.615-201ENST00000410769 117 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-1328P-201ENST00000410938 106 ntBASIC2.87□□□□□ -1.95
CTCFP49711 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.87□□□□□ -1.95
CTCFP49711 MED28P2-201ENST00000475771 317 ntBASIC2.87□□□□□ -1.95
CTCFP49711 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CTCFP49711 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.87□□□□□ -1.95
CTCFP49711 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.87□□□□□ -1.95
CTCFP49711 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CTCFP49711 CYCSP27-201ENST00000527643 293 ntBASIC2.87□□□□□ -1.95
CTCFP49711 AC021269.2-201ENST00000532318 330 ntBASIC2.87□□□□□ -1.95
CTCFP49711 SNORA59B-202ENST00000578183 701 ntBASIC2.87□□□□□ -1.95
CTCFP49711 AC011494.1-201ENST00000596454 237 ntBASIC2.87□□□□□ -1.95
CTCFP49711 AC008121.1-201ENST00000603244 268 ntBASIC2.87□□□□□ -1.95
CTCFP49711 RNU6-6P-201ENST00000606623 107 ntBASIC2.87□□□□□ -1.95
CTCFP49711 uc_338.14-201ENST00000613162 166 ntBASIC2.87□□□□□ -1.95
CTCFP49711 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.87□□□□□ -1.95
CTCFP49711 AC138627.2-201ENST00000624202 601 ntBASIC2.87□□□□□ -1.95
CTCFP49711 MIR7157-201ENST00000635801 60 ntBASIC2.87□□□□□ -1.95
CTCFP49711 MIR3662-201ENST00000637030 95 ntBASIC2.87□□□□□ -1.95
CTCFP49711 MIR7515-201ENST00000637837 67 ntBASIC2.87□□□□□ -1.95
CTCFP49711 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CTCFP49711 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CTCFP49711 AC121333.1-201ENST00000567488 2709 ntBASIC2.86□□□□□ -1.95
CTCFP49711 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CTCFP49711 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CTCFP49711 MIR147B-201ENST00000390185 80 ntBASIC2.86□□□□□ -1.95
CTCFP49711 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
CTCFP49711 U8.13-201ENST00000390842 128 ntBASIC2.86□□□□□ -1.95
CTCFP49711 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CTCFP49711 MRPS10P2-201ENST00000431226 381 ntBASIC2.86□□□□□ -1.95
CTCFP49711 Z98742.2-201ENST00000431564 187 ntBASIC2.86□□□□□ -1.95
CTCFP49711 HMGB1P31-201ENST00000437242 427 ntBASIC2.86□□□□□ -1.95
CTCFP49711 MTATP6P13-201ENST00000438531 667 ntBASIC2.86□□□□□ -1.95
CTCFP49711 MRPL50P4-201ENST00000446432 475 ntBASIC2.86□□□□□ -1.95
CTCFP49711 AP001324.2-201ENST00000461163 319 ntBASIC2.86□□□□□ -1.95
CTCFP49711 RPL23AP45-201ENST00000476406 468 ntBASIC2.86□□□□□ -1.95
CTCFP49711 RPL23AP49-201ENST00000492925 468 ntBASIC2.86□□□□□ -1.95
CTCFP49711 MTCYBP18-201ENST00000501056 747 ntBASIC2.86□□□□□ -1.95
CTCFP49711 RNU6-1069P-201ENST00000516612 133 ntBASIC2.86□□□□□ -1.95
CTCFP49711 CR383656.8-201ENST00000549046 145 ntBASIC2.86□□□□□ -1.95
CTCFP49711 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.86□□□□□ -1.95
CTCFP49711 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.86□□□□□ -1.95
CTCFP49711 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.86□□□□□ -1.95
CTCFP49711 AL356575.1-201ENST00000603008 283 ntBASIC2.86□□□□□ -1.95
CTCFP49711 AL356280.1-201ENST00000603614 379 ntBASIC2.86□□□□□ -1.95
CTCFP49711 AC103810.6-201ENST00000606708 136 ntBASIC2.86□□□□□ -1.95
CTCFP49711 AC002553.4-201ENST00000616896 331 ntBASIC2.86□□□□□ -1.95
CTCFP49711 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.86□□□□□ -1.95
CTCFP49711 MTND5P6-201ENST00000422338 1798 ntBASIC2.86□□□□□ -1.95
CTCFP49711 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.86□□□□□ -1.95
CTCFP49711 MTND5P30-201ENST00000452896 1731 ntBASIC2.85□□□□□ -1.95
CTCFP49711 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.85□□□□□ -1.95
CTCFP49711 Y_RNA.248-201ENST00000364501 109 ntBASIC2.85□□□□□ -1.95
CTCFP49711 RNU6-332P-201ENST00000391193 108 ntBASIC2.85□□□□□ -1.95
CTCFP49711 SNORD56-201ENST00000413522 71 ntBASIC2.85□□□□□ -1.95
CTCFP49711 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.85□□□□□ -1.95
CTCFP49711 RPL7P43-201ENST00000478876 753 ntBASIC2.85□□□□□ -1.95
CTCFP49711 AC069439.1-201ENST00000494739 167 ntBASIC2.85□□□□□ -1.95
CTCFP49711 MTCYBP40-201ENST00000509390 1135 ntBASIC2.85□□□□□ -1.95
CTCFP49711 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.85□□□□□ -1.95
CTCFP49711 Y_RNA.670-201ENST00000516255 105 ntBASIC2.85□□□□□ -1.95
CTCFP49711 SNORA31.15-201ENST00000516771 132 ntBASIC2.85□□□□□ -1.95
CTCFP49711 AC090616.3-201ENST00000582184 217 ntBASIC2.85□□□□□ -1.95
CTCFP49711 MIR4635-201ENST00000583759 79 ntBASIC2.85□□□□□ -1.95
CTCFP49711 AC068944.2-201ENST00000610373 403 ntBASIC2.85□□□□□ -1.95
CTCFP49711 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.84□□□□□ -1.95
CTCFP49711 MIR378A-201ENST00000362177 66 ntBASIC2.84□□□□□ -1.95
CTCFP49711 RNU6-858P-201ENST00000362436 107 ntBASIC2.84□□□□□ -1.95
CTCFP49711 RNU5E-7P-201ENST00000365290 117 ntBASIC2.84□□□□□ -1.95
CTCFP49711 RNU6-843P-201ENST00000384454 104 ntBASIC2.84□□□□□ -1.95
CTCFP49711 Y_RNA.540-201ENST00000384638 111 ntBASIC2.84□□□□□ -1.95
CTCFP49711 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.84□□□□□ -1.95
CTCFP49711 RNU6-373P-201ENST00000411247 98 ntBASIC2.84□□□□□ -1.95
CTCFP49711 AC104389.3-201ENST00000445629 235 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms