Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MED28P2-201ENST00000475771 317 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD3P31249 AP006245.1-201ENST00000522549 120 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXD3P31249 AL590705.4-201ENST00000532209 134 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.63□□□□□ -1.99
HOXD3P31249 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD3P31249 AL162713.1-201ENST00000604480 262 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AP000942.4-201ENST00000604811 241 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AC019159.1-201ENST00000605094 187 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AC022149.2-201ENST00000621061 203 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 PWAR6-201ENST00000552334 4618 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXD3P31249 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD3P31249 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD3P31249 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD3P31249 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
HOXD3P31249 AC233981.2-201ENST00000611524 1614 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RNU6-238P-201ENST00000363313 106 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 Y_RNA.424-201ENST00000384063 103 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 Y_RNA.512-201ENST00000384518 102 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 MIR625-201ENST00000385047 85 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 SNORA12.2-201ENST00000391040 156 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RNU6-700P-201ENST00000391043 107 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 AC017079.2-201ENST00000416102 485 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 DPH3P2-201ENST00000422618 250 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RPL21P2-201ENST00000440049 481 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD3P31249 AC124916.1-201ENST00000444020 547 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD3P31249 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD3P31249 TOMM22P6-201ENST00000465035 409 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RPL30P10-201ENST00000488148 337 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RPL23AP75-201ENST00000491601 451 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RN7SL504P-201ENST00000494496 287 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD3P31249 RN7SKP272-201ENST00000516988 232 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 IGKV2-26-201ENST00000518305 343 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD3P31249 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD3P31249 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD3P31249 MIR4503-201ENST00000582187 83 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 AC124312.5-201ENST00000604451 268 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD3P31249 AL162274.2-201ENST00000614406 332 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 AC024581.2-201ENST00000619986 252 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD3P31249 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 RBBP8P1-201ENST00000449447 1844 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXD3P31249 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD3P31249 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD3P31249 AC007496.3-201ENST00000624987 3443 ntBASIC2.62□□□□□ -1.99
HOXD3P31249 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXD3P31249 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
HOXD3P31249 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD3P31249 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HOXD3P31249 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXD3P31249 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD3P31249 AL513302.2-201ENST00000562313 1842 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
HOXD3P31249 Y_RNA.47-201ENST00000362697 108 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RNA5SP374-201ENST00000362939 125 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 Y_RNA.106-201ENST00000363189 100 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RNU6-463P-201ENST00000384340 107 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RNU6-843P-201ENST00000384454 104 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 SNORA69.1-201ENST00000390904 137 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 U3.26-201ENST00000391236 204 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RNU6-101P-201ENST00000410323 104 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RNU6-1245P-201ENST00000411130 106 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC007098.1-201ENST00000420122 367 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC006028.1-201ENST00000438379 402 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AL513124.1-201ENST00000450410 614 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD3P31249 U8.22-201ENST00000459141 133 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 RNU7-87P-201ENST00000459343 62 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AP002884.2-201ENST00000471647 395 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC093663.1-201ENST00000497190 394 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC097462.2-201ENST00000504623 481 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXD3P31249 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.61□□□□□ -1.99
HOXD3P31249 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXD3P31249 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXD3P31249 MIR5680-201ENST00000577577 84 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 MIR4738-201ENST00000579134 87 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 MIR4276-201ENST00000584832 70 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC091152.3-201ENST00000604227 325 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 YPEL5P2-201ENST00000605553 359 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 AC004832.5-201ENST00000608677 401 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 SNORA43.4-201ENST00000629559 138 ntBASIC2.61□□□□□ -1.99
HOXD3P31249 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXD3P31249 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXD3P31249 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD3P31249 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXD3P31249 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HOXD3P31249 AC091564.4-201ENST00000533934 2194 ntBASIC2.6□□□□□ -1.99
HOXD3P31249 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXD3P31249 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HOXD3P31249 RNA5SP197-201ENST00000363357 119 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms