Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL365361.1-201ENST00000566942 3481 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SMARCA1P28370 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SMARCA1P28370 AC093831.2-201ENST00000624393 3427 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.36□□□□□ -1.87
SMARCA1P28370 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SMARCA1P28370 Y_RNA.5-201ENST00000362334 102 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 Y_RNA.48-201ENST00000362710 103 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 RNU6-527P-201ENST00000363425 104 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 SNORD116-20-201ENST00000384529 92 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 MIR521-1-201ENST00000384902 87 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 RNU6-308P-201ENST00000390957 107 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 RN7SKP58-201ENST00000411010 305 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC009414.1-201ENST00000427200 443 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.36□□□□□ -1.87
SMARCA1P28370 MTND3P9-201ENST00000429526 346 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC107083.1-201ENST00000439643 279 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AL137792.2-201ENST00000443484 235 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.36□□□□□ -1.87
SMARCA1P28370 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.36□□□□□ -1.87
SMARCA1P28370 U8.21-201ENST00000459536 136 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 RPS29P27-201ENST00000463711 170 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 RPS29P26-201ENST00000477483 171 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 FO393415.2-201ENST00000480085 343 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC096576.1-201ENST00000489014 359 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 SCGB1D5P-201ENST00000515134 247 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 RNU6-470P-201ENST00000515954 104 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AP005902.1-201ENST00000521358 186 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.36□□□□□ -1.87
SMARCA1P28370 CBX3P7-201ENST00000532876 502 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.36□□□□□ -1.87
SMARCA1P28370 CR383656.8-201ENST00000549046 145 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC018889.1-201ENST00000605372 397 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.36□□□□□ -1.87
SMARCA1P28370 AC090115.4-201ENST00000609970 188 ntBASIC3.36□□□□□ -1.87
SMARCA1P28370 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SMARCA1P28370 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SMARCA1P28370 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
SMARCA1P28370 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.35□□□□□ -1.87
SMARCA1P28370 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.35□□□□□ -1.87
SMARCA1P28370 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCA1P28370 RNU6-1115P-201ENST00000362490 106 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 Y_RNA.445-201ENST00000384168 102 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 SNORA26.7-201ENST00000391288 122 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 AL590004.1-201ENST00000405321 300 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 PMCHL1-202ENST00000423102 261 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCA1P28370 AL161651.1-201ENST00000440882 223 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 AC006026.2-201ENST00000457376 180 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 RN7SL75P-201ENST00000461926 281 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 RPL23AP49-201ENST00000492925 468 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 ACA59.1-201ENST00000515966 143 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 Y_RNA.711-201ENST00000516993 102 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 SNORA31.18-201ENST00000517043 134 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 AC007536.1-201ENST00000533382 349 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCA1P28370 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SMARCA1P28370 AC008739.2-201ENST00000597006 317 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 MIR8076-201ENST00000611401 83 ntBASIC3.35□□□□□ -1.87
SMARCA1P28370 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.35□□□□□ -1.87
SMARCA1P28370 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCA1P28370 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.34□□□□□ -1.87
SMARCA1P28370 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SMARCA1P28370 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SMARCA1P28370 RNU6-858P-201ENST00000362436 107 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 U8.9-201ENST00000365667 134 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 Y_RNA.463-201ENST00000384271 102 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 RNU6-692P-201ENST00000384496 107 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 RNU6-750P-201ENST00000390946 107 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 MIR887-201ENST00000401258 79 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 MIR1289-1-201ENST00000408836 144 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 RNU2-49P-201ENST00000410666 184 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC096649.2-201ENST00000416186 393 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC074117.2-201ENST00000417130 397 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AL358075.3-201ENST00000426289 226 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.34□□□□□ -1.87
SMARCA1P28370 AC022018.1-201ENST00000430685 241 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 RPL23AP58-201ENST00000440453 469 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC243964.1-201ENST00000441814 261 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.34□□□□□ -1.87
SMARCA1P28370 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.34□□□□□ -1.87
SMARCA1P28370 NIPA2P5-201ENST00000452282 464 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC133134.1-201ENST00000466800 359 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC022447.4-201ENST00000504053 364 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC097462.2-201ENST00000504623 481 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 SMURF2P1-201ENST00000514992 481 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 ACA59.2-201ENST00000517061 156 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 SNORA31.23-201ENST00000517219 133 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 SNRPGP18-201ENST00000553000 214 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 MIR4273-201ENST00000582824 84 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 VN1R107P-201ENST00000601784 209 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC078795.3-201ENST00000602913 472 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AL355877.2-201ENST00000603670 358 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 UCA1.1-201ENST00000620952 75 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC002064.3-201ENST00000623448 346 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 AC241585.2-209ENST00000638217 143 ntBASIC3.34□□□□□ -1.87
SMARCA1P28370 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
SMARCA1P28370 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.33□□□□□ -1.88
SMARCA1P28370 RNU1-35P-201ENST00000362782 153 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 Y_RNA.112-201ENST00000363250 102 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms