Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR1248-201ENST00000629190 106 ntBASIC1.43□□□□□ -2.18
USF1P22415 U6.114-201ENST00000636407 96 ntBASIC1.43□□□□□ -2.18
USF1P22415 U4.7-201ENST00000638126 106 ntBASIC1.43□□□□□ -2.18
USF1P22415 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.42□□□□□ -2.18
USF1P22415 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.42□□□□□ -2.18
USF1P22415 RNY1P10-201ENST00000363268 113 ntBASIC1.42□□□□□ -2.18
USF1P22415 SNORA62.1-201ENST00000364287 154 ntBASIC1.42□□□□□ -2.18
USF1P22415 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
USF1P22415 RNU6-45P-201ENST00000384471 107 ntBASIC1.42□□□□□ -2.18
USF1P22415 RPS3AP3-201ENST00000411933 242 ntBASIC1.42□□□□□ -2.18
USF1P22415 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.42□□□□□ -2.18
USF1P22415 ZNF736P12Y-201ENST00000443152 1243 ntBASIC1.42□□□□□ -2.18
USF1P22415 AC079781.2-201ENST00000446424 169 ntBASIC1.42□□□□□ -2.18
USF1P22415 AC096745.1-201ENST00000509945 370 ntBASIC1.42□□□□□ -2.18
USF1P22415 AC009646.1-201ENST00000510455 318 ntBASIC1.42□□□□□ -2.18
USF1P22415 RNU6-410P-201ENST00000517006 107 ntBASIC1.42□□□□□ -2.18
USF1P22415 AP001372.4-201ENST00000524889 472 ntBASIC1.42□□□□□ -2.18
USF1P22415 SNORD53B-201ENST00000577887 78 ntBASIC1.42□□□□□ -2.18
USF1P22415 RMST_6.1-201ENST00000611980 203 ntBASIC1.42□□□□□ -2.18
USF1P22415 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.42□□□□□ -2.18
USF1P22415 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.42□□□□□ -2.18
USF1P22415 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
USF1P22415 Y_RNA.226-201ENST00000364337 114 ntBASIC1.41□□□□□ -2.18
USF1P22415 RNY4P34-201ENST00000364779 95 ntBASIC1.41□□□□□ -2.18
USF1P22415 Y_RNA.560-201ENST00000384689 102 ntBASIC1.41□□□□□ -2.18
USF1P22415 AL031577.2-201ENST00000404133 280 ntBASIC1.41□□□□□ -2.18
USF1P22415 RNU6-321P-201ENST00000410912 106 ntBASIC1.41□□□□□ -2.18
USF1P22415 RNU6-1245P-201ENST00000411130 106 ntBASIC1.41□□□□□ -2.18
USF1P22415 VN1R36P-201ENST00000414936 291 ntBASIC1.41□□□□□ -2.18
USF1P22415 AL358453.1-201ENST00000422522 250 ntBASIC1.41□□□□□ -2.18
USF1P22415 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.41□□□□□ -2.18
USF1P22415 RNU6-333P-201ENST00000459117 107 ntBASIC1.41□□□□□ -2.18
USF1P22415 BZW1P2-201ENST00000473537 826 ntBASIC1.41□□□□□ -2.18
USF1P22415 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.41□□□□□ -2.18
USF1P22415 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.41□□□□□ -2.18
USF1P22415 MTND1P22-201ENST00000510572 951 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC008834.1-201ENST00000511612 175 ntBASIC1.41□□□□□ -2.18
USF1P22415 TRMT112P2-201ENST00000512910 132 ntBASIC1.41□□□□□ -2.18
USF1P22415 RNU5F-2P-201ENST00000516066 82 ntBASIC1.41□□□□□ -2.18
USF1P22415 RNU6-970P-201ENST00000516312 107 ntBASIC1.41□□□□□ -2.18
USF1P22415 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.41□□□□□ -2.18
USF1P22415 AP003072.2-201ENST00000527756 676 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC022880.1-201ENST00000534017 973 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.41□□□□□ -2.18
USF1P22415 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.41□□□□□ -2.18
USF1P22415 DNAJC19P9-201ENST00000555084 351 ntBASIC1.41□□□□□ -2.18
USF1P22415 MIR4285-201ENST00000581001 85 ntBASIC1.41□□□□□ -2.18
USF1P22415 MIR4303-201ENST00000581299 66 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC103987.3-201ENST00000582071 292 ntBASIC1.41□□□□□ -2.18
USF1P22415 MIR548AB-201ENST00000584917 84 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC010928.2-201ENST00000588017 287 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC098848.2-201ENST00000588023 330 ntBASIC1.41□□□□□ -2.18
USF1P22415 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.41□□□□□ -2.18
USF1P22415 AC018889.1-201ENST00000605372 397 ntBASIC1.41□□□□□ -2.18
USF1P22415 AL359821.1-201ENST00000605519 182 ntBASIC1.41□□□□□ -2.18
USF1P22415 AP000654.2-201ENST00000605633 586 ntBASIC1.41□□□□□ -2.18
USF1P22415 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.41□□□□□ -2.18
USF1P22415 MTND4P23-201ENST00000447723 1363 ntBASIC1.41□□□□□ -2.18
USF1P22415 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.41□□□□□ -2.18
USF1P22415 AC233981.2-201ENST00000611524 1614 ntBASIC1.4□□□□□ -2.18
USF1P22415 AC006026.1-201ENST00000444025 1803 ntBASIC1.4□□□□□ -2.18
USF1P22415 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
USF1P22415 CBX3P1-201ENST00000325243 554 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNU6-1287P-201ENST00000362914 107 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNU6-1285P-201ENST00000363480 105 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNU6-105P-201ENST00000363909 104 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNA5SP363-201ENST00000365072 115 ntBASIC1.4□□□□□ -2.19
USF1P22415 Y_RNA.367-201ENST00000365544 101 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNU5A-2P-201ENST00000384337 116 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNU6-1060P-201ENST00000384664 107 ntBASIC1.4□□□□□ -2.19
USF1P22415 RNU6-550P-201ENST00000391057 101 ntBASIC1.4□□□□□ -2.19
USF1P22415 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.4□□□□□ -2.19
USF1P22415 Z82205.1-201ENST00000428456 297 ntBASIC1.4□□□□□ -2.19
USF1P22415 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC1.4□□□□□ -2.19
USF1P22415 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.4□□□□□ -2.19
USF1P22415 AC022447.4-201ENST00000504053 364 ntBASIC1.4□□□□□ -2.19
USF1P22415 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.4□□□□□ -2.19
USF1P22415 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.4□□□□□ -2.19
USF1P22415 AP001893.2-201ENST00000526949 202 ntBASIC1.4□□□□□ -2.19
USF1P22415 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.4□□□□□ -2.19
USF1P22415 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.4□□□□□ -2.19
USF1P22415 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.4□□□□□ -2.19
USF1P22415 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
USF1P22415 AC011155.2-201ENST00000623202 216 ntBASIC1.4□□□□□ -2.19
USF1P22415 AC079248.2-201ENST00000623779 326 ntBASIC1.4□□□□□ -2.19
USF1P22415 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
USF1P22415 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
USF1P22415 Y_RNA.324-201ENST00000365165 102 ntBASIC1.39□□□□□ -2.19
USF1P22415 RNU6-160P-201ENST00000384591 107 ntBASIC1.39□□□□□ -2.19
USF1P22415 SNORA48.1-201ENST00000390879 135 ntBASIC1.39□□□□□ -2.19
USF1P22415 AL357139.1-201ENST00000407792 426 ntBASIC1.39□□□□□ -2.19
USF1P22415 MIR1287-201ENST00000408492 90 ntBASIC1.39□□□□□ -2.19
USF1P22415 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.39□□□□□ -2.19
USF1P22415 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USF1P22415 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.39□□□□□ -2.19
USF1P22415 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USF1P22415 GPR143P-201ENST00000434155 205 ntBASIC1.39□□□□□ -2.19
USF1P22415 KATNBL1P3-201ENST00000443475 909 ntBASIC1.39□□□□□ -2.19
USF1P22415 AL035666.1-201ENST00000446195 348 ntBASIC1.39□□□□□ -2.19
USF1P22415 RNU7-125P-201ENST00000458760 62 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms