Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2□□□□□ -2.09
HOXC4P09017 TRBV1-201ENST00000476502 284 ntBASIC2□□□□□ -2.09
HOXC4P09017 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2□□□□□ -2.09
HOXC4P09017 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2□□□□□ -2.09
HOXC4P09017 Y_RNA.665-201ENST00000516177 98 ntBASIC2□□□□□ -2.09
HOXC4P09017 RNU6-685P-201ENST00000517088 95 ntBASIC2□□□□□ -2.09
HOXC4P09017 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2□□□□□ -2.09
HOXC4P09017 SCOCP1-201ENST00000554676 349 ntBASIC2□□□□□ -2.09
HOXC4P09017 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2□□□□□ -2.09
HOXC4P09017 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2□□□□□ -2.09
HOXC4P09017 AC091135.1-201ENST00000585943 307 ntBASIC2□□□□□ -2.09
HOXC4P09017 UBE2V2P2-201ENST00000587677 504 ntBASIC2□□□□□ -2.09
HOXC4P09017 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2□□□□□ -2.09
HOXC4P09017 AC098826.3-201ENST00000603823 466 ntBASIC2□□□□□ -2.09
HOXC4P09017 AC104763.2-201ENST00000604179 382 ntBASIC2□□□□□ -2.09
HOXC4P09017 CTHRC1P1-201ENST00000605383 469 ntBASIC2□□□□□ -2.09
HOXC4P09017 AC021646.1-201ENST00000605469 484 ntBASIC2□□□□□ -2.09
HOXC4P09017 AL359314.1-201ENST00000616913 261 ntBASIC2□□□□□ -2.09
HOXC4P09017 AL031601.2-202ENST00000622650 282 ntBASIC2□□□□□ -2.09
HOXC4P09017 MTND5P42-201ENST00000637720 498 ntBASIC2□□□□□ -2.09
HOXC4P09017 KPNA2P1-201ENST00000458289 1591 ntBASIC2□□□□□ -2.09
HOXC4P09017 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
HOXC4P09017 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC4P09017 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.99□□□□□ -2.09
HOXC4P09017 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXC4P09017 Y_RNA.373-201ENST00000365600 103 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 RNU6-1127P-201ENST00000384580 107 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC4P09017 AC019129.1-201ENST00000403786 261 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 RAP1BP3-201ENST00000407180 549 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 RNA5SP118-201ENST00000410385 109 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 RPS12P24-201ENST00000412619 387 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AL139156.1-201ENST00000412785 841 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC4P09017 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.99□□□□□ -2.09
HOXC4P09017 PRPS1P1-201ENST00000445305 876 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 CECR9-201ENST00000453421 199 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXC4P09017 SNRPFP3-201ENST00000457792 225 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 SCARNA18-201ENST00000459004 134 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 RPS27P21-201ENST00000486977 252 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC083904.1-201ENST00000487828 231 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 GZMAP1-201ENST00000503054 631 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 LRRC34P2-201ENST00000514850 553 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 SCARNA3-201ENST00000517097 143 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 RNA5SP165-201ENST00000517142 115 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXC4P09017 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXC4P09017 AC010186.2-204ENST00000537668 439 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXC4P09017 MIR3199-1-201ENST00000582434 88 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC011712.1-201ENST00000588959 234 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AL117336.2-201ENST00000602435 335 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 C8orf59P2-201ENST00000603441 271 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 APOOP1-201ENST00000604695 592 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC022893.3-201ENST00000607665 437 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC009318.2-201ENST00000610917 651 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC063943.3-201ENST00000615562 356 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 uc_338.34-201ENST00000617467 174 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 MIR7843-201ENST00000622274 79 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 AC022140.2-201ENST00000623500 188 ntBASIC1.99□□□□□ -2.09
HOXC4P09017 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC4P09017 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC4P09017 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
HOXC4P09017 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.98□□□□□ -2.09
HOXC4P09017 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXC4P09017 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.98□□□□□ -2.09
HOXC4P09017 RNU6-845P-201ENST00000362578 103 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 Y_RNA.157-201ENST00000363638 102 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 RNU6-512P-201ENST00000364438 103 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 SNORD81.2-201ENST00000365153 76 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 SNORA4.3-201ENST00000365564 137 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 RNU6-190P-201ENST00000384154 102 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 SNORA16.2-201ENST00000390991 127 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
HOXC4P09017 RNU6-373P-201ENST00000411247 98 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 RNA5SP111-201ENST00000411386 101 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 EEF1A1P40-201ENST00000412883 573 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
HOXC4P09017 AL513185.2-201ENST00000425543 193 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 AL669831.1-202ENST00000428504 417 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 MTND3P23-201ENST00000431980 347 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 AL591212.2-201ENST00000433923 257 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 GTF2IP13-201ENST00000438487 386 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC4P09017 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.98□□□□□ -2.09
HOXC4P09017 AMD1P1-201ENST00000457220 922 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 AC090515.1-201ENST00000465295 476 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC4P09017 SNORA31.6-201ENST00000516241 130 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 RNU6-1314P-201ENST00000517139 104 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.98□□□□□ -2.09
HOXC4P09017 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC4P09017 AL137161.1-201ENST00000532231 390 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC4P09017 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.98□□□□□ -2.09
HOXC4P09017 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.98□□□□□ -2.09
HOXC4P09017 MIR5571-201ENST00000577998 113 ntBASIC1.98□□□□□ -2.09
HOXC4P09017 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.98□□□□□ -2.09
HOXC4P09017 AL161798.1-201ENST00000604630 131 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms