Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RNU6-1065P-201ENST00000384513 106 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 UBE2V1P15-201ENST00000407776 448 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC0.03□□□□□ -2.41
SPTA1P02549 RNU6-575P-201ENST00000411326 105 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 AC245047.7-201ENST00000440265 293 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 VN1R10P-201ENST00000447106 875 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.03□□□□□ -2.41
SPTA1P02549 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.03□□□□□ -2.41
SPTA1P02549 AC093534.1-201ENST00000504977 132 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 SCARNA8-201ENST00000515924 131 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 AC136619.2-201ENST00000563361 631 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 AC002400.1-201ENST00000569310 726 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.03□□□□□ -2.41
SPTA1P02549 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.03□□□□□ -2.41
SPTA1P02549 AL357094.1-201ENST00000603845 844 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 AL603758.1-201ENST00000618654 241 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 RNU1-39P-201ENST00000383897 165 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-152P-201ENST00000384037 107 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 Y_RNA.447-201ENST00000384184 113 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-1176P-201ENST00000390955 107 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AL359704.1-201ENST00000411586 781 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC008267.5-201ENST00000424928 265 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 MTCO3P17-201ENST00000443775 513 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC244505.3-201ENST00000454598 187 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC105758.1-201ENST00000506038 399 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC010587.2-201ENST00000511727 448 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 SNORA31.2-201ENST00000516019 134 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-885P-201ENST00000516607 104 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-586P-201ENST00000517265 104 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.02□□□□□ -2.41
SPTA1P02549 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.02□□□□□ -2.41
SPTA1P02549 AC107952.2-201ENST00000606048 486 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC239868.4-201ENST00000608318 671 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC120349.3-201ENST00000624377 529 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC068205.3-201ENST00000636385 468 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-23P-201ENST00000363283 107 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-1335P-201ENST00000365426 107 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 Y_RNA.568-201ENST00000384742 113 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 ELOCP14-201ENST00000428070 331 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AL669831.1-202ENST00000428504 417 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 ELOCP7-201ENST00000439968 331 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AL929288.2-201ENST00000446368 407 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AP001324.2-201ENST00000461163 319 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-667P-201ENST00000517186 102 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 AC022432.1-201ENST00000595739 310 ntBASIC0.02□□□□□ -2.41
SPTA1P02549 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.02□□□□□ -2.41
SPTA1P02549 RNU6-898P-201ENST00000365627 104 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC007435.1-201ENST00000421086 415 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.01□□□□□ -2.41
SPTA1P02549 RNU7-90P-201ENST00000459216 62 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.01□□□□□ -2.41
SPTA1P02549 RNU6-1183P-201ENST00000517054 60 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC093027.1-201ENST00000546698 429 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 MIR3167-201ENST00000579623 85 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.01□□□□□ -2.41
SPTA1P02549 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC0.01□□□□□ -2.41
SPTA1P02549 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
SPTA1P02549 Y_RNA.468-201ENST00000384298 102 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
SPTA1P02549 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.01□□□□□ -2.41
SPTA1P02549 RPS26P5-201ENST00000418544 335 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.01□□□□□ -2.41
SPTA1P02549 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.01□□□□□ -2.41
SPTA1P02549 AL590556.1-201ENST00000423231 483 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 HMGB1P30-201ENST00000492455 606 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.01□□□□□ -2.41
SPTA1P02549 RNU6-197P-201ENST00000516680 100 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 RNU6-678P-201ENST00000516832 109 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 RNA5SP291-201ENST00000517222 105 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.01□□□□□ -2.41
SPTA1P02549 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC0.01□□□□□ -2.41
SPTA1P02549 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC0.01□□□□□ -2.41
SPTA1P02549 AL355297.3-201ENST00000604082 446 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC079610.2-201ENST00000604818 690 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 MIR3976-201ENST00000606807 139 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC098614.4-201ENST00000607601 462 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 AC090517.2-201ENST00000614966 680 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 Y_RNA.804-201ENST00000615262 101 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 MIR198-201ENST00000637333 62 ntBASIC0.01□□□□□ -2.41
SPTA1P02549 Y_RNA.65-201ENST00000362846 100 ntBASIC0□□□□□ -2.41
SPTA1P02549 RNU5E-8P-201ENST00000363502 116 ntBASIC0□□□□□ -2.41
SPTA1P02549 U3.9-201ENST00000363823 204 ntBASIC0□□□□□ -2.41
SPTA1P02549 SNORA72.2-201ENST00000365028 127 ntBASIC0□□□□□ -2.41
SPTA1P02549 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0□□□□□ -2.41
SPTA1P02549 RNU6-1245P-201ENST00000411130 106 ntBASIC0□□□□□ -2.41
SPTA1P02549 PPP1R11P2-201ENST00000423543 382 ntBASIC0□□□□□ -2.41
SPTA1P02549 RPS15AP9-201ENST00000439856 381 ntBASIC0□□□□□ -2.41
SPTA1P02549 AC012308.1-201ENST00000451232 178 ntBASIC0□□□□□ -2.41
SPTA1P02549 MTCYBP1-201ENST00000454315 1119 ntBASIC0□□□□□ -2.41
SPTA1P02549 FCF1P6-201ENST00000456841 595 ntBASIC0□□□□□ -2.41
SPTA1P02549 MTCO2P18-201ENST00000457151 658 ntBASIC0□□□□□ -2.41
SPTA1P02549 SUMO1P1-201ENST00000497904 306 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms