Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA3O43365 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA3O43365 AC002543.1-201ENST00000299783 1954 ntBASIC3.14□□□□□ -1.91
HOXA3O43365 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA3O43365 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXA3O43365 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.13□□□□□ -1.91
HOXA3O43365 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
HOXA3O43365 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXA3O43365 MAPK10-253ENST00000641010 4072 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AL161912.2-201ENST00000565707 3007 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 RNU6-626P-201ENST00000363354 107 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 RNA5SP387-201ENST00000364226 106 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 SNORD58.1-201ENST00000391313 66 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA3O43365 AL133475.1-201ENST00000404414 305 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 RNU6-1140P-201ENST00000410517 106 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 RNU2-49P-201ENST00000410666 184 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 RNA5SP38-201ENST00000410750 119 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AC245291.1-201ENST00000419501 328 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 PTGES3P4-201ENST00000426243 356 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 MTND5P15-201ENST00000434246 349 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AC005002.2-201ENST00000438228 269 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA3O43365 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA3O43365 RPL7P49-201ENST00000471402 708 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AC090525.1-201ENST00000479116 478 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA3O43365 SEPT14P8-201ENST00000508026 178 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 SNORA31.16-201ENST00000516773 139 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 RNA5SP54-201ENST00000516951 92 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AC115990.1-201ENST00000526957 301 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA3O43365 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA3O43365 YPEL5P3-201ENST00000547227 352 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA3O43365 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA3O43365 AC069200.1-201ENST00000609511 323 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.13□□□□□ -1.91
HOXA3O43365 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA3O43365 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA3O43365 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA3O43365 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA3O43365 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA3O43365 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXA3O43365 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA3O43365 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA3O43365 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA3O43365 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA3O43365 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA3O43365 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA3O43365 UBE3AP2-201ENST00000429033 2259 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA3O43365 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HOXA3O43365 MIR423-201ENST00000362201 94 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNU4-90P-201ENST00000362773 141 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNU6-1266P-201ENST00000362794 105 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNA5SP322-201ENST00000363617 119 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNU6-280P-201ENST00000364145 104 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 U8.11-201ENST00000384699 133 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 U8.12-201ENST00000384701 133 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 EI24P2-201ENST00000397776 1076 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 SNORA11.1-201ENST00000408133 129 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 MIR548I3-201ENST00000408378 149 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 MIR548I1-201ENST00000408810 149 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNU5A-5P-201ENST00000411054 116 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA3O43365 AL139247.1-201ENST00000422768 325 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AL591419.1-201ENST00000427423 339 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 HSPE1P25-201ENST00000455484 251 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 U8.18-201ENST00000459285 133 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AP002884.2-201ENST00000471647 395 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RPL26P26-201ENST00000480251 434 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AC006517.1-201ENST00000480485 328 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNU1-95P-201ENST00000516357 160 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 RNU1-128P-201ENST00000516704 160 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AC026403.1-201ENST00000518938 295 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AC022695.1-201ENST00000522089 237 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXA3O43365 AC105137.2-201ENST00000569073 466 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA3O43365 AC009779.6-201ENST00000603972 165 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 BX284668.6-201ENST00000606899 438 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AL391261.4-201ENST00000616012 481 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AC084757.4-201ENST00000616350 526 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AL591424.2-201ENST00000617023 128 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 AC012314.7-201ENST00000619693 93 ntBASIC3.12□□□□□ -1.91
HOXA3O43365 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA3O43365 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA3O43365 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA3O43365 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA3O43365 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA3O43365 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA3O43365 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms