Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
BRPF3Q9ULD4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 SNORA14A-201ENST00000364773 135 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 RNU6-142P-201ENST00000384019 107 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AL079342.1-201ENST00000401460 267 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 SNORA57.3-201ENST00000411095 141 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 SNRPGP7-201ENST00000469016 106 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 MIR2116-201ENST00000517221 80 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AC022695.1-201ENST00000522089 237 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 MIR4659A-201ENST00000580269 81 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 SNORA43.4-201ENST00000629559 138 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 AL513302.2-201ENST00000562313 1842 ntBASIC4.49□□□□□ -1.69
BRPF3Q9ULD4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.237-201ENST00000364439 102 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.416-201ENST00000384014 113 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 RNU6-843P-201ENST00000384454 104 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 MIR544A-201ENST00000384855 91 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 MIR548H3-201ENST00000408771 118 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 BPY2DP-201ENST00000422208 265 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 RPL23AP82-202ENST00000427528 469 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AC016700.2-201ENST00000446011 156 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 RN7SL442P-201ENST00000473804 320 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 MED28P2-201ENST00000475771 317 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 RN7SL323P-201ENST00000494712 295 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 HMGB3P17-201ENST00000504195 649 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 RNU6-111P-201ENST00000517179 105 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 SNORA31.23-201ENST00000517219 133 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AC016256.1-201ENST00000547971 354 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AL391261.3-201ENST00000557194 520 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AC021739.1-201ENST00000559631 174 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AC023824.2-201ENST00000566185 400 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 HSPE1P7-201ENST00000604681 321 ntBASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
BRPF3Q9ULD4 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 ADAM3A-203ENST00000461344 2157 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AL391987.6-201ENST00000305671 199 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 MIR335-201ENST00000362173 94 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 Y_RNA.504-201ENST00000384481 104 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 SNORA48.8-201ENST00000391324 134 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 UBA52P6-201ENST00000399822 382 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 HLFP1-201ENST00000402375 499 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AC004383.1-201ENST00000438135 289 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 RPS29P7-201ENST00000439662 171 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AP000870.1-201ENST00000472927 406 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AC009163.5-201ENST00000575421 637 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AL109918.3-201ENST00000603072 338 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 SNORA62.6-201ENST00000606322 83 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AC011476.5-201ENST00000615594 130 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 AL354798.1-201ENST00000622505 329 ntBASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRPF3Q9ULD4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.46□□□□□ -1.69
BRPF3Q9ULD4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.69
BRPF3Q9ULD4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
BRPF3Q9ULD4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 AC058791.1-201ENST00000608412 3198 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 Y_RNA.20-201ENST00000362479 113 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 RNU5B-2P-201ENST00000363036 113 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 RNA5SP97-201ENST00000365006 84 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 MIR30B-201ENST00000384850 88 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 MRPL35P1-201ENST00000404272 572 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 RNU2-20P-201ENST00000410425 191 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 RNU6-628P-201ENST00000410675 107 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 TRIAP1P1-201ENST00000427062 225 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 EIF1P2-201ENST00000428233 350 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 PHBP14-201ENST00000512887 367 ntBASIC4.46□□□□□ -1.7
BRPF3Q9ULD4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms