| CNTNAP2 | Q9UHC6 | AC087463.1-201 | ENST00000568541 | 556 nt | TSL 2 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | MIR4293-201 | ENST00000584305 | 78 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC135178.3-204 | ENST00000585181 | 451 nt | TSL 2 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC015908.2-202 | ENST00000585243 | 756 nt | TSL 3 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC068790.3-201 | ENST00000602988 | 553 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL133393.1-201 | ENST00000603277 | 287 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | LINC00310-205 | ENST00000609062 | 863 nt | TSL 5 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC025034.2-201 | ENST00000623264 | 286 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC244517.5-202 | ENST00000623741 | 500 nt | TSL 3 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC092442.1-201 | ENST00000636216 | 138 nt | APPRIS P1 TSL 5 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | OR5B3-202 | ENST00000641865 | 1046 nt | APPRIS P1 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC103988.1-201 | ENST00000566382 | 2177 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC009902.3-201 | ENST00000606235 | 2172 nt | BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | KIAA1107-202 | ENST00000636278 | 4065 nt | APPRIS P1 TSL 5 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | FOXP2-210 | ENST00000403559 | 6415 nt | TSL 2 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | MCMDC2-201 | ENST00000313616 | 2043 nt | TSL 2 BASIC | 3.04 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC008505.1-204 | ENST00000637363 | 2714 nt | TSL 5 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | MIR133A1HG-202 | ENST00000581072 | 4226 nt | TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | SLAIN1-203 | ENST00000351546 | 2394 nt | TSL 2 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC011460.1-201 | ENST00000636268 | 1834 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL161781.1-201 | ENST00000354277 | 403 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | RNU6-28P-201 | ENST00000362378 | 107 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | RNU6-212P-201 | ENST00000362642 | 104 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.276-201 | ENST00000364732 | 109 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | SNORA51.4-201 | ENST00000364993 | 124 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC069280.1-201 | ENST00000413094 | 439 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC069079.1-201 | ENST00000419889 | 400 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC069257.1-202 | ENST00000425275 | 422 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | USMG5P1-201 | ENST00000425964 | 177 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL731684.2-201 | ENST00000426839 | 333 nt | TSL 5 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC137499.1-201 | ENST00000427602 | 88 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC099799.1-201 | ENST00000439809 | 192 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | RAC1P7-201 | ENST00000445367 | 377 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL139109.1-201 | ENST00000455491 | 297 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | SNORD109B-201 | ENST00000458961 | 67 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | SNORD109A-201 | ENST00000459128 | 67 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC098869.1-201 | ENST00000481627 | 292 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | RN7SL432P-201 | ENST00000484057 | 298 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | HMGB1P35-201 | ENST00000503360 | 598 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC096577.1-203 | ENST00000506386 | 541 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.683-201 | ENST00000516508 | 93 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | RNU6-570P-201 | ENST00000517051 | 105 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | MDM2-221 | ENST00000517852 | 393 nt | TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AP005357.1-201 | ENST00000520749 | 476 nt | TSL 3 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AP005380.1-201 | ENST00000584896 | 547 nt | TSL 4 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL713866.2-201 | ENST00000603579 | 219 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | Z98751.3-201 | ENST00000604447 | 521 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC008162.1-201 | ENST00000604718 | 254 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | MTND4LP5-201 | ENST00000605152 | 292 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL670379.4-201 | ENST00000605279 | 254 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC006329.2-201 | ENST00000611491 | 394 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL450472.3-201 | ENST00000615578 | 367 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AC127459.3-201 | ENST00000624328 | 466 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | SLC39A10-201 | ENST00000359634 | 5322 nt | APPRIS P1 TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | XRN1-202 | ENST00000392981 | 5383 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | AL136360.1-201 | ENST00000503377 | 1900 nt | BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | OLFM3-206 | ENST00000536598 | 2801 nt | TSL 5 BASIC | 3.03 | □□□□□ -1.92 | | |
| CNTNAP2 | Q9UHC6 | OR9G4-204 | ENST00000641668 | 2608 nt | APPRIS P1 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | MINDY3-202 | ENST00000378036 | 2452 nt | TSL 2 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | FNBP1L-203 | ENST00000370253 | 3889 nt | APPRIS ALT1 TSL 5 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | ARHGAP5-202 | ENST00000345122 | 9604 nt | APPRIS P3 TSL 5 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | C1D-201 | ENST00000355848 | 2233 nt | APPRIS P1 TSL 1 (best) BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | MIR26A1-201 | ENST00000362205 | 77 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU6-859P-201 | ENST00000362728 | 107 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU1-112P-201 | ENST00000364401 | 164 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU4-42P-201 | ENST00000364738 | 142 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNA5SP240-201 | ENST00000365355 | 128 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.515-201 | ENST00000384535 | 112 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | MIR181B1-201 | ENST00000385240 | 110 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | U3.20-201 | ENST00000390909 | 217 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | SNORD58.1-201 | ENST00000391313 | 66 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC005538.1-201 | ENST00000455991 | 594 nt | TSL 3 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | KC877373.1-201 | ENST00000479066 | 408 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC021382.1-201 | ENST00000483523 | 359 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1332P-201 | ENST00000516666 | 104 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC103783.1-201 | ENST00000520506 | 373 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC022690.2-201 | ENST00000525673 | 589 nt | TSL 3 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | TMCO5B-203 | ENST00000529623 | 509 nt | TSL 4 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC040926.1-201 | ENST00000530195 | 238 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC023824.4-201 | ENST00000562572 | 476 nt | TSL 3 BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC010620.2-201 | ENST00000600135 | 313 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AL161423.1-201 | ENST00000613700 | 262 nt | BASIC | 3.02 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | DMD-203 | ENST00000357033 | 13956 nt | APPRIS P3 TSL 1 (best) BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | TPTE2P4-201 | ENST00000258589 | 1605 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | Y_RNA.2-201 | ENST00000362330 | 96 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | SNORD27-201 | ENST00000363981 | 72 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNY1-201 | ENST00000364228 | 113 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNA5SP126-201 | ENST00000365092 | 109 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU5E-6P-201 | ENST00000365574 | 115 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU6-662P-201 | ENST00000384253 | 104 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU6-713P-201 | ENST00000384761 | 107 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | MIR215-201 | ENST00000384858 | 110 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | TRAJ31-201 | ENST00000390506 | 57 nt | APPRIS P1 BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | MIR1302-6-201 | ENST00000408466 | 90 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | RNU6-1140P-201 | ENST00000410517 | 106 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC133106.1-201 | ENST00000419029 | 397 nt | TSL 3 BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC104332.1-201 | ENST00000440471 | 797 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | LAMTOR5P1-201 | ENST00000444290 | 270 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | FCF1P4-201 | ENST00000448326 | 183 nt | BASIC | 3.01 | □□□□□ -1.93 | | |
| CNTNAP2 | Q9UHC6 | AC108938.1-201 | ENST00000451204 | 136 nt | BASIC | 3.01 | □□□□□ -1.93 | | |