Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 HSPE1P4-201ENST00000550617 308 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 UBL5P4-201ENST00000562584 236 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 AC020914.4-201ENST00000597690 277 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 FAM27D1-201ENST00000612308 341 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 AC021753.1-201ENST00000635724 168 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 AL773545.4-201ENST00000637262 310 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 AL513478.4-201ENST00000641636 310 ntBASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
TRIM56Q9BRZ2 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.15□□□□□ -1.74
TRIM56Q9BRZ2 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
TRIM56Q9BRZ2 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
TRIM56Q9BRZ2 Y_RNA.240-201ENST00000364469 95 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 SNORA70C-201ENST00000384538 135 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 HLFP1-201ENST00000402375 499 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 RPL23AP82-202ENST00000427528 469 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AP001324.2-201ENST00000461163 319 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC091021.1-201ENST00000468051 388 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 RPL31P61-201ENST00000496160 376 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 SNORA40.9-201ENST00000515895 93 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 RNU5F-8P-201ENST00000515941 111 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC022559.1-201ENST00000520905 205 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC005176.2-201ENST00000596933 147 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC011921.3-201ENST00000605540 361 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC114781.5-201ENST00000615297 108 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AL138880.2-201ENST00000616214 239 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AL590240.4-201ENST00000616908 390 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC002076.2-201ENST00000617362 122 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC073349.3-201ENST00000617616 186 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
TRIM56Q9BRZ2 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 Y_RNA.331-201ENST00000365267 102 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 Y_RNA.418-201ENST00000384029 102 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 RNU6-1289P-201ENST00000384431 106 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 SNORA57.1-201ENST00000391227 145 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 SNRPGP7-201ENST00000469016 106 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AP001025.1-201ENST00000486139 332 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 RNU7-143P-201ENST00000516781 65 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 RNA5SP54-201ENST00000516951 92 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AP005660.1-201ENST00000522972 293 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AC021231.3-201ENST00000558497 370 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 MIR7151-201ENST00000617477 60 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 AL445567.2-201ENST00000618935 498 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 MIR3199-2-201ENST00000636243 86 ntBASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
TRIM56Q9BRZ2 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 RNU6-961P-201ENST00000363893 105 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 Y_RNA.304-201ENST00000365011 112 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 SNORD50.2-201ENST00000365465 70 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 Y_RNA.446-201ENST00000384178 104 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 MIR544A-201ENST00000384855 91 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 U3.19-201ENST00000390893 196 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 SNORA3C-201ENST00000408792 125 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 RNU6-651P-201ENST00000411040 105 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 SETP5-201ENST00000437270 562 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 SNORD2.1-201ENST00000458762 69 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 RPS4XP22-201ENST00000480755 780 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 SNORD19.2-201ENST00000516978 73 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AC006199.1-201ENST00000548728 219 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AC007224.1-201ENST00000564410 144 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AL360157.1-201ENST00000565962 87 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 AC004832.4-201ENST00000608952 331 ntBASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TRIM56Q9BRZ2 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
TRIM56Q9BRZ2 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TRIM56Q9BRZ2 RNA5SP197-201ENST00000363357 119 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 184.2 ms