Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AC098614.3-201ENST00000438957 440 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 MTND3P10-201ENST00000450967 341 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AL139109.1-201ENST00000455491 297 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.46□□□□□ -2.02
USP28Q96RU2 AC011005.2-201ENST00000487324 359 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 SNORA14.1-201ENST00000516113 141 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 SCARNA16.3-201ENST00000516595 184 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 RNU6-273P-201ENST00000516937 96 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 RNU6-1183P-201ENST00000517054 60 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.46□□□□□ -2.02
USP28Q96RU2 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.46□□□□□ -2.02
USP28Q96RU2 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.46□□□□□ -2.02
USP28Q96RU2 MIR5692C1-201ENST00000585309 91 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AC011712.1-201ENST00000588959 234 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AL670379.10-201ENST00000604330 253 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AL670379.9-201ENST00000605428 253 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
USP28Q96RU2 FAM157A-202ENST00000615155 405 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AC121333.1-201ENST00000567488 2709 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 MIR412-201ENST00000362142 91 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 RNU6-1083P-201ENST00000384022 107 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 SNORA48.3-201ENST00000391081 134 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AC096649.2-201ENST00000416186 393 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 BPY2DP-201ENST00000422208 265 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 BRK1P2-201ENST00000442875 223 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AL078601.1-201ENST00000444542 271 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 OSTCP8-201ENST00000445117 448 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 HIGD1AP2-201ENST00000446367 280 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 RPL7P12-201ENST00000446719 750 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AL031659.1-201ENST00000447075 539 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 MTND5P20-201ENST00000448677 143 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 RPL23AP7-203ENST00000449021 469 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AC011753.1-201ENST00000451001 220 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.45□□□□□ -2.02
USP28Q96RU2 SNORA19.2-201ENST00000516013 114 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 MIR892C-201ENST00000516410 77 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 RNU6-875P-201ENST00000516488 106 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 RNU6-1069P-201ENST00000516612 133 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 Y_RNA.702-201ENST00000516843 96 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 RNU6-1088P-201ENST00000516850 104 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.45□□□□□ -2.02
USP28Q96RU2 AC026464.5-201ENST00000562497 722 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 MIR4742-201ENST00000581069 85 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AL160281.1-201ENST00000605307 311 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
USP28Q96RU2 RMST_4.1-201ENST00000616886 107 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AC022306.2-201ENST00000617563 647 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 AP000553.5-201ENST00000641933 54 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 MTND4P27-201ENST00000450813 1354 ntBASIC2.45□□□□□ -2.02
USP28Q96RU2 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USP28Q96RU2 AC080128.1-201ENST00000474389 1917 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
USP28Q96RU2 Y_RNA.72-201ENST00000362894 103 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 RNU6-254P-201ENST00000363377 107 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 Y_RNA.184-201ENST00000363884 108 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 RNA5SP160-201ENST00000364866 120 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 SNORD81.2-201ENST00000365153 76 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 Y_RNA.324-201ENST00000365165 102 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 RNU6-898P-201ENST00000365627 104 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 Y_RNA.414-201ENST00000384011 101 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 RNU6-767P-201ENST00000384132 107 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 SNORD73A-201ENST00000386062 65 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 RNU6-750P-201ENST00000390946 107 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AC022028.1-201ENST00000412054 408 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.44□□□□□ -2.02
USP28Q96RU2 HMGB1P9-201ENST00000429856 646 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AC098831.1-201ENST00000440661 216 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.44□□□□□ -2.02
USP28Q96RU2 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.44□□□□□ -2.02
USP28Q96RU2 MRPL42P6-201ENST00000486397 371 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.44□□□□□ -2.02
USP28Q96RU2 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.44□□□□□ -2.02
USP28Q96RU2 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.44□□□□□ -2.02
USP28Q96RU2 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.44□□□□□ -2.02
USP28Q96RU2 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.44□□□□□ -2.02
USP28Q96RU2 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.44□□□□□ -2.02
USP28Q96RU2 MIR4672-201ENST00000583126 81 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
USP28Q96RU2 APOOP1-201ENST00000604695 592 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 Y_RNA.804-201ENST00000615262 101 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 AC104260.1-201ENST00000616660 539 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.44□□□□□ -2.02
USP28Q96RU2 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP28Q96RU2 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
USP28Q96RU2 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.43□□□□□ -2.02
USP28Q96RU2 RNU6-845P-201ENST00000362578 103 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 Y_RNA.530-201ENST00000384587 101 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 MIR518D-201ENST00000385014 87 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 EIF4E2P1-201ENST00000393781 255 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP28Q96RU2 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.43□□□□□ -2.02
USP28Q96RU2 RNA5SP338-201ENST00000410495 85 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 NDUFS5P4-201ENST00000412983 318 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 RPL26P27-201ENST00000414397 437 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 ARL5AP1-201ENST00000418991 388 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 MTCO3P46-201ENST00000425787 232 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 IFNA20P-201ENST00000436840 528 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.43□□□□□ -2.02
USP28Q96RU2 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms