Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR5002-201ENST00000584713 97 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC006566.1-201ENST00000608943 513 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AL773524.1-201ENST00000614065 229 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AC091834.1-201ENST00000614543 472 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 AL132822.1-201ENST00000617063 513 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 Z69720.2-201ENST00000624755 279 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 U4.7-201ENST00000638126 106 ntBASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HDDC3Q8N4P3 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 RNU4-21P-201ENST00000362802 126 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 Y_RNA.324-201ENST00000365165 102 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 RNU6-74P-201ENST00000384235 107 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 RNU6-1222P-201ENST00000384615 107 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 SNORA26.8-201ENST00000391306 124 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 RNU2-40P-201ENST00000410833 196 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC244636.1-201ENST00000421152 228 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 BX510359.4-201ENST00000423750 193 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AL596276.1-201ENST00000434465 418 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 RPS29P15-201ENST00000458329 171 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC079804.2-201ENST00000490376 200 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 RNU6-377P-201ENST00000515965 102 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC115990.1-201ENST00000526957 301 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AP003072.2-201ENST00000527756 676 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 SEPT7P9-203ENST00000604116 343 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AC008945.2-201ENST00000606056 604 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 AL359314.1-201ENST00000616913 261 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 MIR7111-201ENST00000619751 72 ntBASIC2.01□□□□□ -2.09
HDDC3Q8N4P3 MIR378A-201ENST00000362177 66 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-37P-201ENST00000362692 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-11P-201ENST00000364234 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNA5SP37-201ENST00000365420 130 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-25P-201ENST00000383873 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-1-201ENST00000383898 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-1029P-201ENST00000384109 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-48P-201ENST00000384161 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-36P-201ENST00000384172 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-4P-201ENST00000384205 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-5P-201ENST00000384238 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-3P-201ENST00000384314 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-16P-201ENST00000384385 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-15P-201ENST00000384534 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-2-201ENST00000384627 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-29P-201ENST00000384637 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-9-201ENST00000384776 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-33P-201ENST00000384793 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 MIR1-2-201ENST00000384961 85 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU4-46P-201ENST00000410818 138 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2□□□□□ -2.09
HDDC3Q8N4P3 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 CBX3P6-201ENST00000430257 527 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC022364.2-201ENST00000457963 554 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNA5SP57-201ENST00000459463 123 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 SNORD42A-201ENST00000459584 64 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC104564.1-201ENST00000493028 407 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RPL23AP63-201ENST00000498752 471 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 SNORD27.1-201ENST00000516319 72 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC060788.1-201ENST00000521318 469 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AK6P1-201ENST00000540219 478 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 GNAI2P1-201ENST00000541815 315 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 MIR4775-201ENST00000581168 75 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 AC064872.1-201ENST00000604823 1072 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 RNU6-6P-201ENST00000606623 107 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 snoU13.31-201ENST00000607291 104 ntBASIC2□□□□□ -2.09
HDDC3Q8N4P3 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2□□□□□ -2.09
HDDC3Q8N4P3 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 Y_RNA.201-201ENST00000364052 96 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 RNU6-456P-201ENST00000384493 107 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 IFNA20P-201ENST00000436840 528 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AC090255.1-201ENST00000495779 349 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AC110588.1-201ENST00000559699 137 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 Z99289.3-201ENST00000605586 594 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AL022345.1-201ENST00000607292 135 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 YWHAEP7-203ENST00000622054 312 ntBASIC1.99□□□□□ -2.09
HDDC3Q8N4P3 AP000553.5-201ENST00000641933 54 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms