Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MTCYBP40-201ENST00000509390 1135 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 RNU2-53P-201ENST00000516257 147 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 AC091544.4-201ENST00000555268 342 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 MTCO3P23-201ENST00000561363 289 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 MIR1273D-201ENST00000577266 86 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.87□□□□□ -2.11
SKA3Q8IX90 AL136363.2-201ENST00000604173 851 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 AC017083.3-201ENST00000609955 700 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 MIR5739-201ENST00000619803 80 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 AL162373.1-201ENST00000620433 407 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 AL359880.1-201ENST00000621879 266 ntBASIC1.87□□□□□ -2.11
SKA3Q8IX90 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
SKA3Q8IX90 Y_RNA.40-201ENST00000362645 93 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU6-527P-201ENST00000363425 104 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU6-105P-201ENST00000363909 104 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU6-1322P-201ENST00000364309 107 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU6-1032P-201ENST00000384100 107 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 RN7SKP223-201ENST00000410582 62 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AL030996.1-201ENST00000411430 235 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AL353705.4-201ENST00000449661 238 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU7-167P-201ENST00000459160 62 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC117503.1-201ENST00000472241 394 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC083798.1-201ENST00000472671 131 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC107401.1-201ENST00000503426 685 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU7-193P-201ENST00000516723 65 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 MTND4P7-201ENST00000523876 130 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AP001893.2-201ENST00000526949 202 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 MIR5002-201ENST00000584713 97 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC004908.3-201ENST00000610248 625 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC093783.1-201ENST00000612976 329 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 uc_338.15-201ENST00000615470 191 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC073534.2-201ENST00000620377 381 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 U4.7-201ENST00000638126 106 ntBASIC1.86□□□□□ -2.11
SKA3Q8IX90 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.86□□□□□ -2.11
SKA3Q8IX90 RNU6-655P-201ENST00000362858 107 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 RNA5SP240-201ENST00000365355 128 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 Y_RNA.399-201ENST00000383955 105 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 MTCO3P40-201ENST00000392516 676 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 CALM2P3-201ENST00000400429 449 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL023284.1-201ENST00000403956 276 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 RN7SKP32-201ENST00000410167 303 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 SNORD56-201ENST00000413522 71 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 DPH3P2-201ENST00000422618 250 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 DLGAP5P1-201ENST00000430307 464 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL139415.2-201ENST00000431968 163 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL591043.1-201ENST00000432461 424 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 PSPHP1-201ENST00000450062 261 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 CYP2C59P-201ENST00000457790 269 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC025033.1-201ENST00000463883 194 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 RPL30P12-201ENST00000474666 353 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL121594.1-201ENST00000475906 575 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC068781.1-201ENST00000488231 618 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 ANXA2P1-201ENST00000505539 926 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC104383.1-201ENST00000530297 370 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AP000889.1-201ENST00000530968 660 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL355297.2-201ENST00000604792 129 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 AL161423.1-201ENST00000613700 262 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 U4atac.1-201ENST00000618345 95 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 DUXAP9-208ENST00000622815 614 ntBASIC1.85□□□□□ -2.11
SKA3Q8IX90 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SKA3Q8IX90 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SKA3Q8IX90 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNU6-428P-201ENST00000362942 107 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNU6-1085P-201ENST00000363576 107 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNU6-1210P-201ENST00000363775 107 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNU4-40P-201ENST00000364351 143 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 RNA5SP126-201ENST00000365092 109 ntBASIC1.84□□□□□ -2.11
SKA3Q8IX90 SNORA69-201ENST00000383895 132 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 353.7 ms