Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MTND4P25-201ENST00000441039 533 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.59□□□□□ -2.31
USP54Q70EL1 AC026414.1-201ENST00000504046 698 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.59□□□□□ -2.31
USP54Q70EL1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.59□□□□□ -2.31
USP54Q70EL1 AC092447.10-201ENST00000620607 1652 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 Y_RNA.294-201ENST00000364916 102 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.59□□□□□ -2.32
USP54Q70EL1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.59□□□□□ -2.32
USP54Q70EL1 AC121161.1-201ENST00000510606 652 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 ACA64.5-201ENST00000516207 127 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 AC009902.1-201ENST00000519351 183 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 SLC2A13P1-201ENST00000531560 322 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 CYP3A52P-201ENST00000563326 91 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.59□□□□□ -2.32
USP54Q70EL1 7SK.7-201ENST00000603504 247 ntBASIC0.59□□□□□ -2.32
USP54Q70EL1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
USP54Q70EL1 SNORA63.3-201ENST00000362682 132 ntBASIC0.58□□□□□ -2.32
USP54Q70EL1 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC0.58□□□□□ -2.32
USP54Q70EL1 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.58□□□□□ -2.32
USP54Q70EL1 AL133373.1-201ENST00000497098 94 ntBASIC0.58□□□□□ -2.32
USP54Q70EL1 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0.58□□□□□ -2.32
USP54Q70EL1 RNA5SP337-201ENST00000517007 109 ntBASIC0.58□□□□□ -2.32
USP54Q70EL1 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.58□□□□□ -2.32
USP54Q70EL1 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.58□□□□□ -2.32
USP54Q70EL1 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.58□□□□□ -2.32
USP54Q70EL1 Z82243.1-201ENST00000609432 473 ntBASIC0.58□□□□□ -2.32
USP54Q70EL1 AC027335.2-201ENST00000624030 375 ntBASIC0.58□□□□□ -2.32
USP54Q70EL1 USP9YP33-201ENST00000412220 421 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.57□□□□□ -2.32
USP54Q70EL1 AC009646.1-201ENST00000510455 318 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 AC079140.3-201ENST00000511111 550 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 SNORA62.5-201ENST00000516634 120 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 AC136628.3-201ENST00000521868 290 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC0.57□□□□□ -2.32
USP54Q70EL1 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.57□□□□□ -2.32
USP54Q70EL1 MIR5094-201ENST00000578766 85 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 MIR4514-201ENST00000581410 57 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 AP000860.1-201ENST00000605250 559 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 AC026741.1-201ENST00000605892 482 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.57□□□□□ -2.32
USP54Q70EL1 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 MIR3529-201ENST00000637713 78 ntBASIC0.57□□□□□ -2.32
USP54Q70EL1 SNORA4.3-201ENST00000365564 137 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 RNU6-701P-201ENST00000384059 107 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 RNU6-166P-201ENST00000384371 107 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 MIR608-201ENST00000384820 100 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 UBE2V1P10-201ENST00000414685 269 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 BX664727.1-201ENST00000416024 466 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 RPL21P111-201ENST00000418453 477 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 SNX2P2-201ENST00000424553 323 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.56□□□□□ -2.32
USP54Q70EL1 HSPE1P9-201ENST00000440046 311 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 PRPS1P1-201ENST00000445305 876 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.56□□□□□ -2.32
USP54Q70EL1 MTCO3P15-201ENST00000526563 574 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.56□□□□□ -2.32
USP54Q70EL1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.56□□□□□ -2.32
USP54Q70EL1 MIR1248-201ENST00000629190 106 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.56□□□□□ -2.32
USP54Q70EL1 RNU6-1284P-201ENST00000363701 100 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 RNU6-343P-201ENST00000364709 104 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 RNU6-843P-201ENST00000384454 104 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC114737.2-201ENST00000421583 173 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.56□□□□□ -2.32
USP54Q70EL1 AC114982.1-201ENST00000469402 321 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 HMGB1P28-201ENST00000507778 552 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.56□□□□□ -2.32
USP54Q70EL1 AP006587.4-201ENST00000526053 529 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 CENPUP1-201ENST00000526649 1202 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 DEFB131D-201ENST00000526803 184 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC023538.1-201ENST00000534576 736 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.56□□□□□ -2.32
USP54Q70EL1 AP003465.2-201ENST00000602571 373 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AC073410.2-201ENST00000603240 332 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 AL022345.2-201ENST00000606307 135 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
USP54Q70EL1 RMST_4.1-201ENST00000616886 107 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 PCMTD1P7-201ENST00000634506 357 ntBASIC0.56□□□□□ -2.32
USP54Q70EL1 snoU2_19.1-201ENST00000362361 80 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 RNU6-23P-201ENST00000363283 107 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 Y_RNA.412-201ENST00000384001 104 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 RNU6-439P-201ENST00000384188 106 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 MIR186-201ENST00000384988 86 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 RNU6-733P-201ENST00000410759 104 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 PIGFP2-201ENST00000421400 651 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 MTCO1P3-201ENST00000429327 192 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 TIMM9P1-201ENST00000436122 256 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 AC005094.1-201ENST00000440420 368 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 AL353752.1-201ENST00000454946 260 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 snoU13.14-201ENST00000459372 104 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 AP003327.1-201ENST00000529684 127 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.55□□□□□ -2.32
USP54Q70EL1 AL133153.1-201ENST00000557756 303 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 AC060771.1-201ENST00000582031 164 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 HMGN1P30-201ENST00000589286 268 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 AC010620.1-201ENST00000601088 1102 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 LINC02555-201ENST00000563933 1951 ntBASIC0.55□□□□□ -2.32
USP54Q70EL1 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.54□□□□□ -2.32
USP54Q70EL1 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms