Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 VN1R36P-201ENST00000414936 291 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AL591043.1-201ENST00000432461 424 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 RPL39P40-201ENST00000445481 146 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 PPP1R2P5-201ENST00000457256 603 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AP000852.1-201ENST00000472460 573 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 MTCO2P30-201ENST00000503662 364 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 ANXA2P1-201ENST00000505539 926 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AC092436.3-201ENST00000511788 257 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 SNORD19.2-201ENST00000516978 73 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 MIR4446-201ENST00000578505 67 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 ELOCP5-201ENST00000604924 333 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 FAM157A-202ENST00000615155 405 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 FO624990.1-201ENST00000636373 85 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 ZNF72P-201ENST00000425869 1908 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.226-201ENST00000364337 114 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 RNU6-214P-201ENST00000384130 107 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 MIR196B-201ENST00000384852 84 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 SNORD67-201ENST00000390833 111 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC007064.1-201ENST00000412238 351 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 BX276092.3-201ENST00000424182 230 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AL590632.1-201ENST00000424289 371 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 FABP5P14-201ENST00000437273 393 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 GSTA11P-201ENST00000452866 669 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC006026.2-201ENST00000457376 180 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 RPL36AP48-201ENST00000485521 314 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC079140.5-201ENST00000507882 310 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 RNA5SP76-201ENST00000516277 87 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 RNU6-256P-201ENST00000516747 97 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 SCOCP1-201ENST00000554676 349 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC005730.3-201ENST00000583067 366 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 MIR4765-201ENST00000585007 77 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC023043.3-201ENST00000593113 385 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC107871.2-201ENST00000612894 502 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 HMGB1P24-202ENST00000615653 685 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC099654.14-201ENST00000638599 341 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 AC121333.1-201ENST00000567488 2709 ntBASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.38□□□□□ -2.03
PDLIM3Q53GG5 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.4-201ENST00000362333 112 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 RNU1-35P-201ENST00000362782 153 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.118-201ENST00000363300 101 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 U3.13-201ENST00000364804 214 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 RNU6-336P-201ENST00000364891 107 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC074117.2-201ENST00000417130 397 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 MTCO3P18-201ENST00000440206 761 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 MTND4LP16-201ENST00000440828 295 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AL359672.1-201ENST00000442302 409 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AMD1P1-201ENST00000457220 922 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 RNU7-66P-201ENST00000459469 62 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 RN7SKP272-201ENST00000516988 232 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 RN7SKP256-201ENST00000517201 314 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC010186.2-204ENST00000537668 439 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC026371.1-201ENST00000551867 419 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 UBL5P2-201ENST00000583788 219 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 MIR3672-201ENST00000584290 82 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 MIR4658-201ENST00000584344 65 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 AC021646.1-201ENST00000605469 484 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 U4.7-201ENST00000638126 106 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.37□□□□□ -2.03
PDLIM3Q53GG5 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.36□□□□□ -2.03
PDLIM3Q53GG5 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms