Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-611P-201ENST00000384276 104 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 MIR544A-201ENST00000384855 91 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 MIR29B2-201ENST00000385055 81 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AL390237.1-201ENST00000404226 1415 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AL445685.2-201ENST00000422551 342 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 OOSP1P1-201ENST00000423265 274 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AL358934.1-201ENST00000432346 324 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 RPL23AP6-201ENST00000446637 472 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 C1DP4-201ENST00000455429 424 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 MTCO2P6-201ENST00000463134 685 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 RPS29P21-201ENST00000496272 170 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 MTCO3P7-201ENST00000510008 774 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AC022616.8-201ENST00000533569 253 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AC005296.1-201ENST00000616145 209 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 AC072046.2-201ENST00000618366 268 ntBASIC2.04□□□□□ -2.08
CCDC40Q4G0X9 RNU6-105P-201ENST00000363909 104 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 RNU6-606P-201ENST00000384721 111 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AL158823.1-201ENST00000418441 478 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 RN7SL429P-201ENST00000479090 223 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 RN7SL489P-201ENST00000486185 223 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 RN7SL327P-201ENST00000488659 223 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC117532.1-201ENST00000514638 323 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 LRRC34P2-201ENST00000514850 553 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 RNU6-430P-201ENST00000517078 107 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC018630.3-201ENST00000542637 96 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 MIR3122-201ENST00000577243 73 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC087241.4-201ENST00000612441 480 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AL773524.1-201ENST00000614065 229 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC091834.1-201ENST00000614543 472 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 RN7SL853P-201ENST00000617250 223 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC022418.1-201ENST00000624118 445 ntBASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
CCDC40Q4G0X9 AC092881.1-201ENST00000638218 2733 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AP000568.1-201ENST00000282964 442 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 SNORD115-3-201ENST00000363100 82 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 RNU6-393P-201ENST00000384475 107 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 RNU6-1222P-201ENST00000384615 107 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 SNORD70.1-201ENST00000391007 85 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC019129.1-201ENST00000403786 261 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AL356432.1-201ENST00000405809 419 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 MIR1262-201ENST00000408276 93 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 RNU2-9P-201ENST00000410194 145 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 MTCO2P34-201ENST00000421994 607 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 MTCO2P11-201ENST00000431069 680 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 RPS15AP10-201ENST00000432472 382 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC132479.1-201ENST00000449160 144 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 PRELID3BP1-201ENST00000457142 540 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 HMGB3P17-201ENST00000504195 649 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 MTND2P33-201ENST00000506452 1031 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 RNU6-377P-201ENST00000515965 102 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 RNU6-965P-201ENST00000516721 96 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC007834.2-201ENST00000536310 343 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC023050.3-201ENST00000541142 333 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 SUB1P2-201ENST00000556401 297 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC025449.1-201ENST00000603896 529 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC123912.5-201ENST00000605470 343 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC109347.2-201ENST00000610220 349 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AC063943.3-201ENST00000615562 356 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 AL359314.1-201ENST00000616913 261 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 ZNF355P-201ENST00000427301 3216 ntBASIC2.02□□□□□ -2.09
CCDC40Q4G0X9 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 RNU6-348P-201ENST00000384386 107 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 RNU6-1127P-201ENST00000384580 107 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 SNORA16.2-201ENST00000390991 127 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 SNORD56-201ENST00000413522 71 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 MTND4P32-201ENST00000437189 1237 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AC003989.2-201ENST00000440224 169 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 USP9YP29-201ENST00000445112 563 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 PRPS1P1-201ENST00000445305 876 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 FDX1P2-201ENST00000450769 375 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 RNU2-69P-201ENST00000516061 100 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AP001893.2-201ENST00000526949 202 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AC027807.1-201ENST00000559921 996 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms