Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.07□□□□□ -2.08
SRP54P61011 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SRP54P61011 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SRP54P61011 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-37P-201ENST00000362692 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-11P-201ENST00000364234 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-25P-201ENST00000383873 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-1-201ENST00000383898 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU5A-6P-201ENST00000384136 116 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-48P-201ENST00000384161 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-36P-201ENST00000384172 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-4P-201ENST00000384205 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-5P-201ENST00000384238 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-611P-201ENST00000384276 104 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-3P-201ENST00000384314 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-16P-201ENST00000384385 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-15P-201ENST00000384534 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-2-201ENST00000384627 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-29P-201ENST00000384637 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNY3P9-201ENST00000384727 106 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-9-201ENST00000384776 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-33P-201ENST00000384793 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 SNORA16.2-201ENST00000390991 127 ntBASIC2.06□□□□□ -2.08
SRP54P61011 SNORA46.1-201ENST00000391069 153 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU2-48P-201ENST00000410694 191 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU2-32P-201ENST00000411193 191 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.06□□□□□ -2.08
SRP54P61011 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.06□□□□□ -2.08
SRP54P61011 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AL137159.1-201ENST00000452808 512 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.06□□□□□ -2.08
SRP54P61011 AL353752.1-201ENST00000454946 260 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.06□□□□□ -2.08
SRP54P61011 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.06□□□□□ -2.08
SRP54P61011 RPL38P4-201ENST00000502376 214 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.06□□□□□ -2.08
SRP54P61011 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.06□□□□□ -2.08
SRP54P61011 AC117532.1-201ENST00000514638 323 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-377P-201ENST00000515965 102 ntBASIC2.06□□□□□ -2.08
SRP54P61011 RN7SKP219-201ENST00000516825 296 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AP001893.2-201ENST00000526949 202 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AP003392.2-201ENST00000527269 208 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.06□□□□□ -2.08
SRP54P61011 AP005435.4-201ENST00000529514 284 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.06□□□□□ -2.08
SRP54P61011 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.06□□□□□ -2.08
SRP54P61011 RNU6-6P-201ENST00000606623 107 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AC091834.1-201ENST00000614543 472 ntBASIC2.06□□□□□ -2.08
SRP54P61011 AC136475.10-201ENST00000620253 385 ntBASIC2.06□□□□□ -2.08
SRP54P61011 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.05□□□□□ -2.08
SRP54P61011 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
SRP54P61011 AP006437.1-201ENST00000641440 3685 ntBASIC2.05□□□□□ -2.08
SRP54P61011 Y_RNA.159-201ENST00000363674 87 ntBASIC2.05□□□□□ -2.08
SRP54P61011 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
SRP54P61011 Y_RNA.399-201ENST00000383955 105 ntBASIC2.05□□□□□ -2.08
SRP54P61011 RNU6-1103P-201ENST00000384150 107 ntBASIC2.05□□□□□ -2.08
SRP54P61011 RNU6-517P-201ENST00000384362 110 ntBASIC2.05□□□□□ -2.08
SRP54P61011 MIR17-201ENST00000385012 84 ntBASIC2.05□□□□□ -2.08
SRP54P61011 AL030996.1-201ENST00000411430 235 ntBASIC2.05□□□□□ -2.08
SRP54P61011 SNORD56-201ENST00000413522 71 ntBASIC2.05□□□□□ -2.08
SRP54P61011 AL356379.1-201ENST00000414105 126 ntBASIC2.05□□□□□ -2.08
SRP54P61011 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.05□□□□□ -2.08
SRP54P61011 SNRPFP3-201ENST00000457792 225 ntBASIC2.05□□□□□ -2.08
SRP54P61011 SCARNA18-201ENST00000459004 134 ntBASIC2.05□□□□□ -2.08
SRP54P61011 RPL21P99-201ENST00000480369 423 ntBASIC2.05□□□□□ -2.08
SRP54P61011 HMGB1P35-201ENST00000503360 598 ntBASIC2.05□□□□□ -2.08
SRP54P61011 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SRP54P61011 AC022616.8-201ENST00000533569 253 ntBASIC2.05□□□□□ -2.08
SRP54P61011 BNIP3P16-201ENST00000589779 534 ntBASIC2.05□□□□□ -2.08
SRP54P61011 AC073648.5-201ENST00000603502 305 ntBASIC2.05□□□□□ -2.08
SRP54P61011 Z82243.1-201ENST00000609432 473 ntBASIC2.05□□□□□ -2.08
SRP54P61011 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.05□□□□□ -2.08
SRP54P61011 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.05□□□□□ -2.08
SRP54P61011 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.05□□□□□ -2.08
SRP54P61011 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.04□□□□□ -2.08
SRP54P61011 RNU6-1159P-201ENST00000362933 107 ntBASIC2.04□□□□□ -2.08
SRP54P61011 Y_RNA.553-201ENST00000384670 102 ntBASIC2.04□□□□□ -2.08
SRP54P61011 MIR544A-201ENST00000384855 91 ntBASIC2.04□□□□□ -2.08
SRP54P61011 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SRP54P61011 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.04□□□□□ -2.08
SRP54P61011 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.04□□□□□ -2.08
SRP54P61011 MTCO2P34-201ENST00000421994 607 ntBASIC2.04□□□□□ -2.08
SRP54P61011 MTND4P14-201ENST00000435799 1354 ntBASIC2.04□□□□□ -2.08
SRP54P61011 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.04□□□□□ -2.08
SRP54P61011 AC013470.1-201ENST00000453438 462 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.04□□□□□ -2.08
SRP54P61011 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.04□□□□□ -2.08
SRP54P61011 RN7SKP298-201ENST00000515950 94 ntBASIC2.04□□□□□ -2.08
SRP54P61011 SNORA25.17-201ENST00000517184 124 ntBASIC2.04□□□□□ -2.08
SRP54P61011 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
SRP54P61011 COPS8P3-201ENST00000526024 482 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.04□□□□□ -2.08
SRP54P61011 CYCSP27-201ENST00000527643 293 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AL137161.1-201ENST00000532231 390 ntBASIC2.04□□□□□ -2.08
SRP54P61011 VN1R107P-201ENST00000601784 209 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AC091805.2-201ENST00000603848 235 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AL132822.1-201ENST00000617063 513 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AC097372.5-201ENST00000623665 376 ntBASIC2.04□□□□□ -2.08
SRP54P61011 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.04□□□□□ -2.08
SRP54P61011 snoU2_19.1-201ENST00000362361 80 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms