Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SCARNA4-202ENST00000625402 129 ntBASIC2.92□□□□□ -1.94
CTCFP49711 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
CTCFP49711 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.91□□□□□ -1.94
CTCFP49711 AL109809.4-201ENST00000603520 2185 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RNU6-461P-201ENST00000364195 107 ntBASIC2.91□□□□□ -1.94
CTCFP49711 Y_RNA.295-201ENST00000364918 102 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RNU6-1083P-201ENST00000384022 107 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RNU6-19P-201ENST00000384718 107 ntBASIC2.91□□□□□ -1.94
CTCFP49711 SNORA80E-201ENST00000384744 137 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RNA5SP219-201ENST00000390940 113 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RPL21P1-201ENST00000399532 476 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RAP1BP3-201ENST00000407180 549 ntBASIC2.91□□□□□ -1.94
CTCFP49711 MIR1277-201ENST00000408536 78 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.91□□□□□ -1.94
CTCFP49711 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.91□□□□□ -1.94
CTCFP49711 POLHP1-201ENST00000411806 470 ntBASIC2.91□□□□□ -1.94
CTCFP49711 AC108667.1-201ENST00000428618 249 ntBASIC2.91□□□□□ -1.94
CTCFP49711 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.91□□□□□ -1.94
CTCFP49711 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.91□□□□□ -1.94
CTCFP49711 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.91□□□□□ -1.94
CTCFP49711 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.91□□□□□ -1.94
CTCFP49711 RNU6-1208P-201ENST00000459588 107 ntBASIC2.91□□□□□ -1.94
CTCFP49711 AC003982.1-202ENST00000469928 248 ntBASIC2.91□□□□□ -1.94
CTCFP49711 MRPL42P6-201ENST00000486397 371 ntBASIC2.91□□□□□ -1.94
CTCFP49711 AC068781.1-201ENST00000488231 618 ntBASIC2.91□□□□□ -1.94
CTCFP49711 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.91□□□□□ -1.94
CTCFP49711 RNU6-189P-201ENST00000516120 101 ntBASIC2.91□□□□□ -1.94
CTCFP49711 COX6CP5-201ENST00000527162 228 ntBASIC2.91□□□□□ -1.94
CTCFP49711 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.91□□□□□ -1.94
CTCFP49711 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.91□□□□□ -1.94
CTCFP49711 AC092807.2-201ENST00000609367 243 ntBASIC2.91□□□□□ -1.94
CTCFP49711 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.91□□□□□ -1.94
CTCFP49711 U6atac.1-201ENST00000616025 117 ntBASIC2.91□□□□□ -1.94
CTCFP49711 AC103705.1-201ENST00000619013 241 ntBASIC2.91□□□□□ -1.94
CTCFP49711 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.91□□□□□ -1.94
CTCFP49711 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.91□□□□□ -1.94
CTCFP49711 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CTCFP49711 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CTCFP49711 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
CTCFP49711 RNY1P10-201ENST00000363268 113 ntBASIC2.9□□□□□ -1.95
CTCFP49711 Y_RNA.573-201ENST00000384763 105 ntBASIC2.9□□□□□ -1.95
CTCFP49711 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
CTCFP49711 AL359511.1-201ENST00000402970 211 ntBASIC2.9□□□□□ -1.95
CTCFP49711 ERLEC1P1-201ENST00000433806 578 ntBASIC2.9□□□□□ -1.95
CTCFP49711 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.9□□□□□ -1.95
CTCFP49711 AC004383.1-201ENST00000438135 289 ntBASIC2.9□□□□□ -1.95
CTCFP49711 HMGN2P26-201ENST00000463169 339 ntBASIC2.9□□□□□ -1.95
CTCFP49711 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.9□□□□□ -1.95
CTCFP49711 Y_RNA.654-201ENST00000497848 106 ntBASIC2.9□□□□□ -1.95
CTCFP49711 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.9□□□□□ -1.95
CTCFP49711 SNORA31.6-201ENST00000516241 130 ntBASIC2.9□□□□□ -1.95
CTCFP49711 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.9□□□□□ -1.95
CTCFP49711 MIR3941-201ENST00000582572 103 ntBASIC2.9□□□□□ -1.95
CTCFP49711 OR1M4P-201ENST00000589199 287 ntBASIC2.9□□□□□ -1.95
CTCFP49711 AC092747.3-201ENST00000603769 301 ntBASIC2.9□□□□□ -1.95
CTCFP49711 AC123912.5-201ENST00000605470 343 ntBASIC2.9□□□□□ -1.95
CTCFP49711 AC026585.1-201ENST00000619582 524 ntBASIC2.9□□□□□ -1.95
CTCFP49711 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.9□□□□□ -1.95
CTCFP49711 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.9□□□□□ -1.95
CTCFP49711 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
CTCFP49711 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CTCFP49711 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.89□□□□□ -1.95
CTCFP49711 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
CTCFP49711 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.89□□□□□ -1.95
CTCFP49711 SNORA25.6-201ENST00000364121 118 ntBASIC2.89□□□□□ -1.95
CTCFP49711 RNU6-877P-201ENST00000383868 107 ntBASIC2.89□□□□□ -1.95
CTCFP49711 SUMO1P4-201ENST00000429430 302 ntBASIC2.89□□□□□ -1.95
CTCFP49711 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CTCFP49711 GZMAP1-201ENST00000503054 631 ntBASIC2.89□□□□□ -1.95
CTCFP49711 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.89□□□□□ -1.95
CTCFP49711 SNORA14.1-201ENST00000516113 141 ntBASIC2.89□□□□□ -1.95
CTCFP49711 SNORA9.3-201ENST00000516383 129 ntBASIC2.89□□□□□ -1.95
CTCFP49711 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.89□□□□□ -1.95
CTCFP49711 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.89□□□□□ -1.95
CTCFP49711 AC104458.1-201ENST00000608243 463 ntBASIC2.89□□□□□ -1.95
CTCFP49711 AC005046.1-201ENST00000608515 625 ntBASIC2.89□□□□□ -1.95
CTCFP49711 AC009318.2-201ENST00000610917 651 ntBASIC2.89□□□□□ -1.95
CTCFP49711 RNU6-748P-201ENST00000384648 107 ntBASIC2.88□□□□□ -1.95
CTCFP49711 ARL5AP1-201ENST00000418991 388 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 AL445687.1-201ENST00000439946 251 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.88□□□□□ -1.95
CTCFP49711 AC117503.1-201ENST00000472241 394 ntBASIC2.88□□□□□ -1.95
CTCFP49711 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.88□□□□□ -1.95
CTCFP49711 AC079140.5-201ENST00000507882 310 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.88□□□□□ -1.95
CTCFP49711 TBCAP3-201ENST00000512475 312 ntBASIC2.88□□□□□ -1.95
CTCFP49711 Y_RNA.665-201ENST00000516177 98 ntBASIC2.88□□□□□ -1.95
CTCFP49711 SNORA43.2-201ENST00000516652 128 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 AC023050.3-201ENST00000541142 333 ntBASIC2.88□□□□□ -1.95
CTCFP49711 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.88□□□□□ -1.95
CTCFP49711 MIR3605-201ENST00000583214 100 ntBASIC2.88□□□□□ -1.95
CTCFP49711 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.88□□□□□ -1.95
CTCFP49711 BNIP3P25-201ENST00000596023 559 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms