Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-105P-201ENST00000363909 104 ntBASIC2.61□□□□□ -1.99
MSH2P43246 RNU6-622P-201ENST00000384272 103 ntBASIC2.61□□□□□ -1.99
MSH2P43246 SNORD73A-201ENST00000386062 65 ntBASIC2.61□□□□□ -1.99
MSH2P43246 RNU6-1148P-201ENST00000410992 104 ntBASIC2.61□□□□□ -1.99
MSH2P43246 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.61□□□□□ -1.99
MSH2P43246 AL513185.2-201ENST00000425543 193 ntBASIC2.61□□□□□ -1.99
MSH2P43246 RPS12P2-201ENST00000439728 269 ntBASIC2.61□□□□□ -1.99
MSH2P43246 AL359672.1-201ENST00000442302 409 ntBASIC2.61□□□□□ -1.99
MSH2P43246 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH2P43246 AC073901.1-201ENST00000462471 408 ntBASIC2.61□□□□□ -1.99
MSH2P43246 AC090515.1-201ENST00000465295 476 ntBASIC2.61□□□□□ -1.99
MSH2P43246 CKS1BP2-201ENST00000497342 240 ntBASIC2.61□□□□□ -1.99
MSH2P43246 CKS1BP7-201ENST00000522230 235 ntBASIC2.61□□□□□ -1.99
MSH2P43246 EIF4BP1-201ENST00000554881 351 ntBASIC2.61□□□□□ -1.99
MSH2P43246 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.61□□□□□ -1.99
MSH2P43246 AC018638.8-201ENST00000588755 281 ntBASIC2.61□□□□□ -1.99
MSH2P43246 RPS15AP11-201ENST00000594193 385 ntBASIC2.61□□□□□ -1.99
MSH2P43246 AL138963.2-201ENST00000605137 226 ntBASIC2.61□□□□□ -1.99
MSH2P43246 BNIP3P10-201ENST00000605360 577 ntBASIC2.61□□□□□ -1.99
MSH2P43246 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
MSH2P43246 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.61□□□□□ -1.99
MSH2P43246 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.61□□□□□ -1.99
MSH2P43246 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
MSH2P43246 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
MSH2P43246 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.6□□□□□ -1.99
MSH2P43246 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
MSH2P43246 OR56A5-201ENST00000340110 738 ntBASIC2.6□□□□□ -1.99
MSH2P43246 Y_RNA.86-201ENST00000363020 111 ntBASIC2.6□□□□□ -1.99
MSH2P43246 RNU6-527P-201ENST00000363425 104 ntBASIC2.6□□□□□ -1.99
MSH2P43246 SNORA67.1-201ENST00000364749 141 ntBASIC2.6□□□□□ -1.99
MSH2P43246 RNU6-336P-201ENST00000364891 107 ntBASIC2.6□□□□□ -1.99
MSH2P43246 RNU6-1283P-201ENST00000365314 105 ntBASIC2.6□□□□□ -1.99
MSH2P43246 U8.8-201ENST00000365399 135 ntBASIC2.6□□□□□ -1.99
MSH2P43246 RNU6-827P-201ENST00000365553 106 ntBASIC2.6□□□□□ -1.99
MSH2P43246 Y_RNA.414-201ENST00000384011 101 ntBASIC2.6□□□□□ -1.99
MSH2P43246 RNU2-63P-201ENST00000410792 194 ntBASIC2.6□□□□□ -1.99
MSH2P43246 MTND1P23-201ENST00000416931 372 ntBASIC2.6□□□□□ -1.99
MSH2P43246 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
MSH2P43246 AL591043.1-201ENST00000432461 424 ntBASIC2.6□□□□□ -1.99
MSH2P43246 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
MSH2P43246 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.6□□□□□ -1.99
MSH2P43246 HMGB3P3-201ENST00000510526 400 ntBASIC2.6□□□□□ -1.99
MSH2P43246 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.6□□□□□ -1.99
MSH2P43246 AC090897.2-201ENST00000581715 130 ntBASIC2.6□□□□□ -1.99
MSH2P43246 SNORD14A-201ENST00000606526 91 ntBASIC2.6□□□□□ -1.99
MSH2P43246 AC096772.1-201ENST00000609146 564 ntBASIC2.6□□□□□ -1.99
MSH2P43246 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
MSH2P43246 AL136221.1-201ENST00000621449 509 ntBASIC2.6□□□□□ -1.99
MSH2P43246 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.6□□□□□ -1.99
MSH2P43246 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.6□□□□□ -1.99
MSH2P43246 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
MSH2P43246 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
MSH2P43246 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
MSH2P43246 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
MSH2P43246 RNU6-1252P-201ENST00000363054 104 ntBASIC2.59□□□□□ -1.99
MSH2P43246 RNU1-138P-201ENST00000384093 164 ntBASIC2.59□□□□□ -1.99
MSH2P43246 SNORA80E-201ENST00000384744 137 ntBASIC2.59□□□□□ -1.99
MSH2P43246 RPS29P13-201ENST00000402041 169 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AL356776.1-201ENST00000406574 447 ntBASIC2.59□□□□□ -1.99
MSH2P43246 RNA5SP390-201ENST00000410191 113 ntBASIC2.59□□□□□ -1.99
MSH2P43246 RNU6-1140P-201ENST00000410517 106 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC138623.1-201ENST00000418060 216 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.59□□□□□ -1.99
MSH2P43246 EIF4EP4-201ENST00000424916 578 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC007969.2-201ENST00000441891 191 ntBASIC2.59□□□□□ -1.99
MSH2P43246 RPL31P58-201ENST00000469001 379 ntBASIC2.59□□□□□ -1.99
MSH2P43246 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.59□□□□□ -1.99
MSH2P43246 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.59□□□□□ -1.99
MSH2P43246 TRBVA-201ENST00000498804 316 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC008628.2-201ENST00000502605 298 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.59□□□□□ -1.99
MSH2P43246 AC018710.1-201ENST00000506509 158 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC008526.1-201ENST00000509149 338 ntBASIC2.59□□□□□ -1.99
MSH2P43246 RNA5SP282-201ENST00000516355 108 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.59□□□□□ -1.99
MSH2P43246 AC079600.2-201ENST00000550076 130 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC103996.1-201ENST00000555468 102 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.59□□□□□ -1.99
MSH2P43246 ELOCP29-201ENST00000588193 334 ntBASIC2.59□□□□□ -1.99
MSH2P43246 AC097372.5-201ENST00000623665 376 ntBASIC2.59□□□□□ -1.99
MSH2P43246 CASC19-280ENST00000642102 1351 ntBASIC2.59□□□□□ -2
MSH2P43246 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
MSH2P43246 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH2P43246 RNU6-1329P-201ENST00000365664 107 ntBASIC2.58□□□□□ -2
MSH2P43246 RNU6-214P-201ENST00000384130 107 ntBASIC2.58□□□□□ -2
MSH2P43246 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.58□□□□□ -2
MSH2P43246 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
MSH2P43246 AL356057.3-201ENST00000402607 340 ntBASIC2.58□□□□□ -2
MSH2P43246 FGF7P8-201ENST00000402994 292 ntBASIC2.58□□□□□ -2
MSH2P43246 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.58□□□□□ -2
MSH2P43246 VN1R36P-201ENST00000414936 291 ntBASIC2.58□□□□□ -2
MSH2P43246 AL139413.1-201ENST00000421309 217 ntBASIC2.58□□□□□ -2
MSH2P43246 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
MSH2P43246 AC105272.1-201ENST00000438604 198 ntBASIC2.58□□□□□ -2
MSH2P43246 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.58□□□□□ -2
MSH2P43246 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.58□□□□□ -2
MSH2P43246 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.58□□□□□ -2
MSH2P43246 AK3P2-201ENST00000507976 429 ntBASIC2.58□□□□□ -2
MSH2P43246 AC092436.3-201ENST00000511788 257 ntBASIC2.58□□□□□ -2
MSH2P43246 RNU6-1332P-201ENST00000516666 104 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms