Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORA9.2-201ENST00000365361 133 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 RNU6-1106P-201ENST00000390845 107 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 AL513475.1-201ENST00000406602 315 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 FTH1P15-201ENST00000406984 280 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 RPS15AP10-201ENST00000432472 382 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.4□□□□□ -1.87
SMARCA1P28370 RPS27P26-201ENST00000494583 239 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 AC116655.1-201ENST00000508324 901 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 SCARNA15.1-201ENST00000516384 125 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.4□□□□□ -1.87
SMARCA1P28370 AP003072.1-201ENST00000531740 145 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SMARCA1P28370 AC025281.1-201ENST00000567026 265 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.4□□□□□ -1.87
SMARCA1P28370 AC022432.1-201ENST00000595739 310 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
SMARCA1P28370 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SMARCA1P28370 Y_RNA.2-201ENST00000362330 96 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 Y_RNA.31-201ENST00000362574 102 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 RNU6-596P-201ENST00000365395 98 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 MIR767-201ENST00000390228 109 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 SNORA75.6-201ENST00000391318 127 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 RNU6-174P-201ENST00000410406 106 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.39□□□□□ -1.87
SMARCA1P28370 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.39□□□□□ -1.87
SMARCA1P28370 RPS15AP5-201ENST00000436276 388 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCA1P28370 DAP3P1-201ENST00000441522 278 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCA1P28370 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCA1P28370 MIR2053-201ENST00000459295 91 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 RPS29P12-201ENST00000460178 152 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.39□□□□□ -1.87
SMARCA1P28370 RAC1P5-201ENST00000512182 576 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 RNU6-120P-201ENST00000516077 103 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 SCARNA16.2-201ENST00000516520 172 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.39□□□□□ -1.87
SMARCA1P28370 AC022080.3-201ENST00000544433 482 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AC006199.1-201ENST00000548728 219 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AC109446.1-201ENST00000566172 220 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 MIR3171-201ENST00000584270 74 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 SNRPGP17-201ENST00000603780 214 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 uc_338.22-201ENST00000622722 187 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 AC097372.5-201ENST00000623665 376 ntBASIC3.39□□□□□ -1.87
SMARCA1P28370 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SMARCA1P28370 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SMARCA1P28370 AP003122.5-201ENST00000527668 3766 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 ADAM3A-203ENST00000461344 2157 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SMARCA1P28370 RNU6-105P-201ENST00000363909 104 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 Y_RNA.216-201ENST00000364205 93 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 RNU6-1280P-201ENST00000365211 107 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 U8.8-201ENST00000365399 135 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 MIR548P-201ENST00000408336 84 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.38□□□□□ -1.87
SMARCA1P28370 AC243428.1-201ENST00000421099 264 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 USMG5P1-201ENST00000425964 177 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.38□□□□□ -1.87
SMARCA1P28370 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.38□□□□□ -1.87
SMARCA1P28370 SNORA59A-201ENST00000459326 152 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.38□□□□□ -1.87
SMARCA1P28370 RNU6-612P-201ENST00000516909 102 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 ELOCP31-201ENST00000540463 467 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.38□□□□□ -1.87
SMARCA1P28370 MIR4298-201ENST00000584380 73 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.38□□□□□ -1.87
SMARCA1P28370 CYP2C61P-201ENST00000604072 290 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 AC133104.2-201ENST00000615272 193 ntBASIC3.38□□□□□ -1.87
SMARCA1P28370 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.38□□□□□ -1.87
SMARCA1P28370 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SMARCA1P28370 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
SMARCA1P28370 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SMARCA1P28370 MTND5P30-201ENST00000452896 1731 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.111-201ENST00000363248 100 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 SNORA63-201ENST00000363450 132 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 RNU6-1040P-201ENST00000383974 107 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 RNU6-933P-201ENST00000384424 107 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 MIR559-201ENST00000385188 96 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SMARCA1P28370 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.37□□□□□ -1.87
SMARCA1P28370 EEF1A1P41-201ENST00000414667 207 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 BX276092.3-201ENST00000424182 230 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SMARCA1P28370 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.37□□□□□ -1.87
SMARCA1P28370 AL118496.2-201ENST00000448300 230 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.631-201ENST00000459607 101 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 MRPL42P6-201ENST00000486397 371 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.37□□□□□ -1.87
SMARCA1P28370 AL442663.2-201ENST00000554385 511 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
SMARCA1P28370 MTCO3P13-201ENST00000577757 781 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.812-201ENST00000610788 101 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.784-201ENST00000613803 101 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.787-201ENST00000616522 101 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.780-201ENST00000617336 101 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 Y_RNA.801-201ENST00000619005 101 ntBASIC3.37□□□□□ -1.87
SMARCA1P28370 MIR3199-2-201ENST00000636243 86 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms