Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC139453.3-201ENST00000493276 369 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AC083906.5-201ENST00000503722 328 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 MTND4LP22-201ENST00000508209 276 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD9P28356 RNA5SP165-201ENST00000517142 115 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AC109479.2-201ENST00000517842 174 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AC245166.1-201ENST00000521012 253 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AMZ2P1-203ENST00000565833 850 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXD9P28356 7SK.7-201ENST00000603504 247 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 AL121655.1-201ENST00000605811 308 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 SNORD58B-201ENST00000607313 66 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXD9P28356 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.03□□□□□ -1.92
HOXD9P28356 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD9P28356 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
HOXD9P28356 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXD9P28356 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
HOXD9P28356 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.93
HOXD9P28356 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.93
HOXD9P28356 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD9P28356 Y_RNA.39-201ENST00000362620 98 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 Y_RNA.111-201ENST00000363248 100 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RNU6-270P-201ENST00000364131 105 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RNU6-933P-201ENST00000384424 107 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RNU6-1035P-201ENST00000384477 107 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RNA5SP274-201ENST00000410484 108 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RNU2-68P-201ENST00000410878 191 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 AC114482.1-201ENST00000418010 247 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 AL117339.3-201ENST00000418733 162 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 AL135938.1-201ENST00000443141 297 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 UQCRHP3-201ENST00000451503 251 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 AC092798.1-201ENST00000458542 409 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 U8.20-201ENST00000459445 131 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RN7SL330P-201ENST00000469709 307 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 RPL23AP45-201ENST00000476406 468 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXD9P28356 SNORA31.19-201ENST00000517079 126 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 CBX3P8-201ENST00000532412 525 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD9P28356 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXD9P28356 MIR4273-201ENST00000582824 84 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 MIR3976-201ENST00000606807 139 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 MIR7106-201ENST00000612419 65 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 U4.1-201ENST00000620349 87 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD9P28356 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD9P28356 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
HOXD9P28356 MAPK10-322ENST00000641485 4530 ntBASIC3.02□□□□□ -1.93
HOXD9P28356 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD9P28356 AC091812.1-201ENST00000432235 1948 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
HOXD9P28356 MIR148B-201ENST00000362252 99 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 Y_RNA.176-201ENST00000363815 109 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 Y_RNA.193-201ENST00000363979 102 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 RNU6-1317P-201ENST00000364582 104 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 MIR10A-201ENST00000385043 110 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 RNU6-823P-201ENST00000391042 103 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 MIR1302-3-201ENST00000408128 138 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 PGBD4P6-201ENST00000421501 610 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 EIF4EP2-201ENST00000422816 654 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD9P28356 AC098614.2-201ENST00000426040 255 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 SNRPEP9-201ENST00000436794 238 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AL731563.1-201ENST00000442202 214 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXD9P28356 AL031274.1-201ENST00000450334 232 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AC133134.1-201ENST00000466800 359 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 RN7SL633P-201ENST00000488974 297 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXD9P28356 SCGB1D5P-201ENST00000515134 247 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 RNU6-572P-201ENST00000516724 80 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 RNU6-703P-201ENST00000516946 107 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AC022616.4-201ENST00000522985 181 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 MIR5696-201ENST00000578474 85 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AL133393.1-201ENST00000603277 287 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AC004805.2-201ENST00000605382 482 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AL161629.2-201ENST00000615347 275 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 AC073308.1-201ENST00000623696 305 ntBASIC3.01□□□□□ -1.93
HOXD9P28356 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD9P28356 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXD9P28356 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.01□□□□□ -1.93
HOXD9P28356 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXD9P28356 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD9P28356 AC096644.4-201ENST00000563417 2912 ntBASIC3□□□□□ -1.93
HOXD9P28356 RNY1P16-201ENST00000363063 111 ntBASIC3□□□□□ -1.93
HOXD9P28356 SNORA9.2-201ENST00000365361 133 ntBASIC3□□□□□ -1.93
HOXD9P28356 RNU6-827P-201ENST00000365553 106 ntBASIC3□□□□□ -1.93
HOXD9P28356 Y_RNA.380-201ENST00000365663 111 ntBASIC3□□□□□ -1.93
HOXD9P28356 CD24P4-201ENST00000382840 243 ntBASIC3□□□□□ -1.93
HOXD9P28356 Y_RNA.389-201ENST00000383924 113 ntBASIC3□□□□□ -1.93
HOXD9P28356 Y_RNA.485-201ENST00000384395 102 ntBASIC3□□□□□ -1.93
HOXD9P28356 RNU6-851P-201ENST00000384565 107 ntBASIC3□□□□□ -1.93
HOXD9P28356 MIR34A-201ENST00000385130 110 ntBASIC3□□□□□ -1.93
HOXD9P28356 MT-TG-201ENST00000387429 68 ntBASIC3□□□□□ -1.93
HOXD9P28356 RNU6-1156P-201ENST00000410365 100 ntBASIC3□□□□□ -1.93
HOXD9P28356 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3□□□□□ -1.93
HOXD9P28356 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3□□□□□ -1.93
HOXD9P28356 NUP35P1-201ENST00000422734 947 ntBASIC3□□□□□ -1.93
HOXD9P28356 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms