Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MTND5P9-201ENST00000503854 1755 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 AC007785.2-201ENST00000598627 1916 ntBASIC3.83□□□□□ -1.8
COL6A1P12109 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL6A1P12109 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL6A1P12109 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.82□□□□□ -1.8
COL6A1P12109 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.82□□□□□ -1.8
COL6A1P12109 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A1P12109 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A1P12109 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL6A1P12109 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A1P12109 RNA5SP322-201ENST00000363617 119 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 Y_RNA.245-201ENST00000364493 95 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A1P12109 Y_RNA.515-201ENST00000384535 112 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 U3.39-201ENST00000408569 239 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 SNORD56-201ENST00000413522 71 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.82□□□□□ -1.8
COL6A1P12109 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.82□□□□□ -1.8
COL6A1P12109 AC025750.2-201ENST00000442609 450 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 FCF1P4-201ENST00000448326 183 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 RPS29P12-201ENST00000460178 152 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 RPL7P5-201ENST00000471472 736 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.82□□□□□ -1.8
COL6A1P12109 AC091144.1-201ENST00000519573 138 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 AC004024.1-201ENST00000549244 247 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.82□□□□□ -1.8
COL6A1P12109 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.82□□□□□ -1.8
COL6A1P12109 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.82□□□□□ -1.8
COL6A1P12109 MIR7106-201ENST00000612419 65 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.82□□□□□ -1.8
COL6A1P12109 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL6A1P12109 MAPK10-362ENST00000641864 4484 ntBASIC3.82□□□□□ -1.8
COL6A1P12109 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A1P12109 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A1P12109 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.81□□□□□ -1.8
COL6A1P12109 Y_RNA.14-201ENST00000362415 103 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 Y_RNA.19-201ENST00000362462 99 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 RNU6-595P-201ENST00000363944 107 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 SNORA20.1-201ENST00000364790 130 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 RNU6-384P-201ENST00000364900 104 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 RNU1-140P-201ENST00000365040 165 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 Y_RNA.376-201ENST00000365638 108 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 RNU6-198P-201ENST00000384258 104 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 Y_RNA.483-201ENST00000384380 101 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 MT-TW-201ENST00000387382 68 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A1P12109 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A1P12109 HMGB3P8-201ENST00000449709 577 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 FABP5P15-201ENST00000453566 214 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 RPL39P38-201ENST00000467018 153 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 RN7SL594P-201ENST00000470590 287 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A1P12109 AC109479.2-201ENST00000517842 174 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A1P12109 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.81□□□□□ -1.8
COL6A1P12109 HIGD1AP1-201ENST00000550979 275 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 AC090517.1-201ENST00000569307 266 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 MIR5701-3-201ENST00000578890 82 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 MIR5701-1-201ENST00000585138 82 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.81□□□□□ -1.8
COL6A1P12109 BRDTP1-201ENST00000605735 677 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 MIR5701-2-201ENST00000615634 82 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.81□□□□□ -1.8
COL6A1P12109 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A1P12109 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
COL6A1P12109 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
COL6A1P12109 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.81□□□□□ -1.8
COL6A1P12109 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL6A1P12109 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A1P12109 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A1P12109 SRP72P2-201ENST00000344851 1979 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 SNORD14B-201ENST00000364533 90 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNU6-827P-201ENST00000365553 106 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNU6-1035P-201ENST00000384477 107 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNU2-38P-201ENST00000410856 79 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 Y_RNA.623-201ENST00000411128 95 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 AL592148.1-201ENST00000413568 445 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A1P12109 TRIAP1P1-201ENST00000427062 225 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 AL627311.1-201ENST00000431514 115 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNU6-1023P-201ENST00000516137 106 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNU6-397P-201ENST00000516226 104 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNU6-928P-201ENST00000516876 104 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RNA5SP290-201ENST00000517133 127 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.8□□□□□ -1.8
COL6A1P12109 AMZ2P1-203ENST00000565833 850 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 MIR5696-201ENST00000578474 85 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 MIR3128-201ENST00000581957 66 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 AC008121.1-201ENST00000603244 268 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 AL645944.1-201ENST00000603857 493 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL6A1P12109 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.8□□□□□ -1.8
COL6A1P12109 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.8□□□□□ -1.8
COL6A1P12109 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.8□□□□□ -1.8
COL6A1P12109 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL6A1P12109 AC007656.2-201ENST00000624902 4547 ntBASIC3.8□□□□□ -1.8
COL6A1P12109 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A1P12109 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.79□□□□□ -1.8
COL6A1P12109 Y_RNA.64-201ENST00000362845 102 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 Y_RNA.471-201ENST00000384312 102 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms