Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SNORA36.2-201ENST00000384004 127 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RNU6-1064P-201ENST00000410626 104 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AL161935.2-201ENST00000414627 60 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 SNX2P2-201ENST00000424553 323 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.05□□□□□ -2.4
SPTA1P02549 AC010631.1-201ENST00000474150 156 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RPL30P1-201ENST00000488676 339 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RPS26P48-201ENST00000491713 339 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC117525.1-201ENST00000515228 503 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RNVU1-2-201ENST00000516326 135 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC0.05□□□□□ -2.4
SPTA1P02549 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.05□□□□□ -2.4
SPTA1P02549 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.05□□□□□ -2.4
SPTA1P02549 MIR5094-201ENST00000578766 85 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 MIR4764-201ENST00000580680 88 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 MTCO2P2-201ENST00000591258 225 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.05□□□□□ -2.4
SPTA1P02549 AC091057.3-201ENST00000602684 733 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC112220.2-201ENST00000605513 533 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RNU4-5P-201ENST00000607255 135 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.05□□□□□ -2.4
SPTA1P02549 AC090625.1-201ENST00000357130 210 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 MIR103A1-201ENST00000362165 78 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RNU6-140P-201ENST00000384566 108 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 MIR942-201ENST00000401111 86 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AL355796.1-201ENST00000406706 323 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 MIR1185-1-201ENST00000408598 86 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC0.05□□□□□ -2.4
SPTA1P02549 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.05□□□□□ -2.4
SPTA1P02549 AL592447.1-201ENST00000447592 540 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.05□□□□□ -2.4
SPTA1P02549 RPL7P43-201ENST00000478876 753 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RPL22P13-201ENST00000493291 347 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC108740.1-201ENST00000498629 225 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.05□□□□□ -2.4
SPTA1P02549 PDCD5P2-201ENST00000507570 312 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.05□□□□□ -2.4
SPTA1P02549 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 RNU4-54P-201ENST00000516428 129 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC015688.6-201ENST00000577737 104 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AL020997.3-201ENST00000602843 359 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC091805.2-201ENST00000603848 235 ntBASIC0.05□□□□□ -2.4
SPTA1P02549 AC134026.1-201ENST00000623249 2239 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNA5SP205-201ENST00000364653 136 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-160P-201ENST00000384591 107 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.04□□□□□ -2.4
SPTA1P02549 RAB28P5-201ENST00000427490 651 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 CETN4P-201ENST00000432407 469 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-1037P-201ENST00000459571 107 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-782P-201ENST00000516852 104 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 MIR3664-201ENST00000579074 99 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 Z98751.3-201ENST00000604447 521 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
SPTA1P02549 PCMTD1P7-201ENST00000634506 357 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-1019P-201ENST00000364424 107 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-546P-201ENST00000383991 107 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-878P-201ENST00000384578 110 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 Y_RNA.551-201ENST00000384661 102 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 MIR194-1-201ENST00000384892 85 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RPL21P111-201ENST00000418453 477 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 MTND4LP11-201ENST00000422184 280 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.04□□□□□ -2.4
SPTA1P02549 RAC1P8-201ENST00000427086 527 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 MTND3P4-201ENST00000453537 303 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AC009646.1-201ENST00000510455 318 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 SCARNA16.5-201ENST00000517114 183 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 HIGD1AP6-201ENST00000521833 279 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AP003049.1-201ENST00000529418 457 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.04□□□□□ -2.4
SPTA1P02549 MIR3136-201ENST00000583498 78 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AL353997.4-201ENST00000586196 166 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AC073410.2-201ENST00000603240 332 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AC004853.1-201ENST00000604902 698 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AC073968.1-201ENST00000618594 637 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
SPTA1P02549 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.04□□□□□ -2.4
SPTA1P02549 AC092447.10-201ENST00000620607 1652 ntBASIC0.04□□□□□ -2.4
SPTA1P02549 RNU6-858P-201ENST00000362436 107 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 MIR140-201ENST00000385282 100 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 RNU6-360P-201ENST00000390944 104 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 ISCA1P1-201ENST00000426679 387 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 RPL32P14-201ENST00000463196 378 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 RPL26P26-201ENST00000480251 434 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.03□□□□□ -2.4
SPTA1P02549 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.03□□□□□ -2.4
SPTA1P02549 RNU6-567P-201ENST00000516746 107 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 RNU6-1092P-201ENST00000516955 87 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 SNORA70.22-201ENST00000517160 124 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.03□□□□□ -2.4
SPTA1P02549 LARP7P2-201ENST00000575306 125 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 AC126365.2-201ENST00000580630 379 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 AP003465.2-201ENST00000602571 373 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 AC091152.3-201ENST00000604227 325 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.03□□□□□ -2.4
SPTA1P02549 AC092608.3-201ENST00000625017 386 ntBASIC0.03□□□□□ -2.4
SPTA1P02549 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.03□□□□□ -2.41
SPTA1P02549 MIR421-201ENST00000365696 85 ntBASIC0.03□□□□□ -2.41
SPTA1P02549 Y_RNA.495-201ENST00000384435 112 ntBASIC0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms