Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNU6-11P-201ENST00000364234 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 Y_RNA.324-201ENST00000365165 102 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-715P-201ENST00000365204 103 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-25P-201ENST00000383873 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-1-201ENST00000383898 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-48P-201ENST00000384161 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-36P-201ENST00000384172 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-4P-201ENST00000384205 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-5P-201ENST00000384238 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-3P-201ENST00000384314 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-16P-201ENST00000384385 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-15P-201ENST00000384534 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-2-201ENST00000384627 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-29P-201ENST00000384637 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNY3P10-201ENST00000384764 102 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-9-201ENST00000384776 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-33P-201ENST00000384793 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 MIR454-201ENST00000390180 115 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 MTND3P17-201ENST00000416968 344 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.91□□□□□ -2.1
CLDN3O15551 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.91□□□□□ -2.1
CLDN3O15551 RPS29P15-201ENST00000458329 171 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNA5SP57-201ENST00000459463 123 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.91□□□□□ -2.1
CLDN3O15551 RNU2-44P-201ENST00000516795 194 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-250P-201ENST00000516958 103 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AC060788.1-201ENST00000521318 469 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.91□□□□□ -2.1
CLDN3O15551 AC015712.3-201ENST00000559380 164 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AC245014.2-201ENST00000603689 287 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AC246785.4-201ENST00000605374 287 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 RNU6-6P-201ENST00000606623 107 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AC091834.1-201ENST00000614543 472 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AL359314.1-201ENST00000616913 261 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 Z69720.2-201ENST00000624755 279 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.91□□□□□ -2.1
CLDN3O15551 U4.7-201ENST00000638126 106 ntBASIC1.91□□□□□ -2.1
CLDN3O15551 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CLDN3O15551 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.91□□□□□ -2.1
CLDN3O15551 FGF7P2-201ENST00000332473 296 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 RNU6-1097P-201ENST00000363586 107 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 RNU6-108P-201ENST00000365558 107 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 RNU6-74P-201ENST00000384235 107 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 RNA5SP465-201ENST00000391195 109 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 SNORA26.8-201ENST00000391306 124 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
CLDN3O15551 MIR1283-2-201ENST00000408621 87 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 SRIP3-201ENST00000413200 219 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
CLDN3O15551 AC244636.1-201ENST00000421152 228 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 IFNA20P-201ENST00000436840 528 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 SNRPGP7-201ENST00000469016 106 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.9□□□□□ -2.11
CLDN3O15551 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.9□□□□□ -2.11
CLDN3O15551 AC018630.3-201ENST00000542637 96 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.9□□□□□ -2.11
CLDN3O15551 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN3O15551 SEPT7P9-203ENST00000604116 343 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 AC064872.1-201ENST00000604823 1072 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 MIR8081-201ENST00000611533 95 ntBASIC1.9□□□□□ -2.11
CLDN3O15551 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
CLDN3O15551 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.9□□□□□ -2.11
CLDN3O15551 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.9□□□□□ -2.11
CLDN3O15551 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CLDN3O15551 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CLDN3O15551 RNU6-1303P-201ENST00000364841 107 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.89□□□□□ -2.11
CLDN3O15551 RNU6-1029P-201ENST00000384109 107 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 RNU6-456P-201ENST00000384493 107 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 RNU6-1222P-201ENST00000384615 107 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 MIR597-201ENST00000384968 97 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.89□□□□□ -2.11
CLDN3O15551 BX295541.1-201ENST00000417774 250 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.89□□□□□ -2.11
CLDN3O15551 AL596276.1-201ENST00000434465 418 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN3O15551 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN3O15551 HMGN2P23-201ENST00000456759 269 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 SNORD42A-201ENST00000459584 64 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AC108210.2-201ENST00000503681 201 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN3O15551 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN3O15551 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN3O15551 RNU6-377P-201ENST00000515965 102 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 SNORA25.15-201ENST00000516487 89 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 MIR3618-201ENST00000580330 88 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 MIR4775-201ENST00000581168 75 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AC008945.2-201ENST00000606056 604 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 AC006566.1-201ENST00000608943 513 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.89□□□□□ -2.11
CLDN3O15551 Y_RNA.169-201ENST00000363745 96 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 Y_RNA.201-201ENST00000364052 96 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 RNU6-297P-201ENST00000384636 107 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms