Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC092435.3-201ENST00000565538 3654 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 RNU6-105P-201ENST00000363909 104 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 U8.8-201ENST00000365399 135 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AL357075.1-201ENST00000404107 726 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 RNU6-1304P-201ENST00000411374 106 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 BMS1P22-201ENST00000414726 313 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 MTCO2P12-201ENST00000427426 682 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AL031274.1-201ENST00000450334 232 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 RPS29P27-201ENST00000463711 170 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC109925.1-201ENST00000478069 331 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC006445.1-201ENST00000491925 405 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC093303.1-201ENST00000514549 295 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 RNU6-1170P-201ENST00000515974 106 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 RNU6-1213P-201ENST00000517075 94 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC006199.1-201ENST00000548728 219 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AL442663.2-201ENST00000554385 511 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC103996.1-201ENST00000555468 102 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.06□□□□□ -1.92
VPS4AQ9UN37 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS4AQ9UN37 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 MTND5P10-201ENST00000603719 1809 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RPL9P7-201ENST00000330965 580 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.128-201ENST00000363391 112 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RNU6-1059P-201ENST00000363752 98 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RNU6-1317P-201ENST00000364582 104 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RNU6-336P-201ENST00000364891 107 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RNU6-474P-201ENST00000384243 107 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RNU6-1106P-201ENST00000390845 107 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 SNORA75.6-201ENST00000391318 127 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RN7SKP58-201ENST00000411010 305 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AL513043.1-201ENST00000439124 535 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC006026.2-201ENST00000457376 180 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RPL9P9-202ENST00000466501 579 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RPL7P42-201ENST00000481005 679 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 RNU6-377P-201ENST00000515965 102 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 DNAJC8P1-201ENST00000554535 372 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 SNRPGP17-201ENST00000603780 214 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC080078.3-201ENST00000605407 463 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC090971.5-201ENST00000621102 293 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 AC090617.7-201ENST00000623952 126 ntBASIC3.05□□□□□ -1.92
VPS4AQ9UN37 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS4AQ9UN37 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.146-201ENST00000363549 102 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 U3.6-201ENST00000363622 211 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.197-201ENST00000364004 102 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 RNA5SP126-201ENST00000365092 109 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.473-201ENST00000384333 102 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 SNORA26.7-201ENST00000391288 122 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 USMG5P1-201ENST00000425964 177 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC146507.2-201ENST00000460608 476 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC018437.1-201ENST00000492214 406 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC116655.1-201ENST00000508324 901 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 BNIP3P16-201ENST00000589779 534 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC078795.3-201ENST00000602913 472 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC073657.2-201ENST00000605661 303 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS4AQ9UN37 MTND5P19-201ENST00000424872 1794 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AL035425.3-201ENST00000564206 4996 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 AC091564.4-201ENST00000533934 2194 ntBASIC3.04□□□□□ -1.92
VPS4AQ9UN37 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS4AQ9UN37 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
VPS4AQ9UN37 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms