Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 Y_RNA.582-201ENST00000391023 95 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 RNU6-903P-201ENST00000391270 109 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AL353193.1-201ENST00000421444 268 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AC008267.5-201ENST00000424928 265 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 USP9YP14-201ENST00000430663 563 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AC124916.1-201ENST00000444020 547 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 Z83846.1-201ENST00000446798 265 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AL356010.1-201ENST00000456364 102 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 SCARNA18-201ENST00000459004 134 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 PSMA3P-201ENST00000555485 635 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 AL161423.1-201ENST00000613700 262 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 ZNF355P-201ENST00000427301 3216 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-37P-201ENST00000362692 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-78P-201ENST00000362897 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-11P-201ENST00000364234 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-25P-201ENST00000383873 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-1-201ENST00000383898 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU5A-6P-201ENST00000384136 116 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-48P-201ENST00000384161 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-36P-201ENST00000384172 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-4P-201ENST00000384205 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-5P-201ENST00000384238 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-622P-201ENST00000384272 103 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-3P-201ENST00000384314 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-16P-201ENST00000384385 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU1-148P-201ENST00000384472 162 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU1-57P-201ENST00000384491 166 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-15P-201ENST00000384534 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-1127P-201ENST00000384580 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-2-201ENST00000384627 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-29P-201ENST00000384637 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-9-201ENST00000384776 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-33P-201ENST00000384793 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 SNORA16.2-201ENST00000390991 127 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU2-29P-201ENST00000410423 189 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AL365400.1-201ENST00000431854 640 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AL161788.1-201ENST00000441805 169 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 GPM6BP3-201ENST00000442797 145 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 PRPS1P1-201ENST00000445305 876 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC006026.2-201ENST00000457376 180 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 CYP2C59P-201ENST00000457790 269 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RPS27P21-201ENST00000486977 252 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 LRRC34P2-201ENST00000514850 553 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU2-69P-201ENST00000516061 100 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AP003392.2-201ENST00000527269 208 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC110588.1-201ENST00000559699 137 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AL138976.2-201ENST00000563989 694 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 NBR2-204ENST00000587322 63 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RPL30P11-203ENST00000598995 310 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AL713866.2-201ENST00000603579 219 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 NDUFA8P1-201ENST00000605525 367 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 RNU6-6P-201ENST00000606623 107 ntBASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS54Q9P1Q0 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 Y_RNA.1-201ENST00000352915 104 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 RNU6-1010P-201ENST00000362757 107 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 RNU6-552P-201ENST00000362869 119 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 RNU5E-7P-201ENST00000365290 117 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 RNA5SP240-201ENST00000365355 128 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 MIR186-201ENST00000384988 86 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AIMP1P2-201ENST00000425294 312 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 MTATP6P26-201ENST00000445926 662 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 MTND1P29-201ENST00000448112 647 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AL513124.1-201ENST00000450410 614 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC117503.1-201ENST00000472241 394 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC108078.1-201ENST00000508073 725 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 MTCYBP40-201ENST00000509390 1135 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC091133.4-201ENST00000511142 308 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 MIR5583-1-201ENST00000580941 59 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC073410.2-201ENST00000603240 332 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 Z99129.1-201ENST00000612510 255 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 uc_338.15-201ENST00000615470 191 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AL354950.2-201ENST00000617939 290 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 U4atac.1-201ENST00000618345 95 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC097372.5-201ENST00000623665 376 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC022418.1-201ENST00000624118 445 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 Z69720.2-201ENST00000624755 279 ntBASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS54Q9P1Q0 HAUS6P2-201ENST00000433254 2404 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms