Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MRPL35P1-201ENST00000404272 572 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 MIR1289-1-201ENST00000408836 144 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AC125238.1-201ENST00000448842 249 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 HMGB1P35-201ENST00000503360 598 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 MIR7112-201ENST00000616126 65 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AP001282.2-201ENST00000616149 309 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AC137590.2-201ENST00000619709 240 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AC007656.2-201ENST00000624902 4547 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 RNU6-884P-201ENST00000363889 107 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 MIR153-2-201ENST00000385225 87 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 RPL23AP48-201ENST00000406913 488 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 RNA5SP39-201ENST00000411245 120 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 CEACAMP4-201ENST00000457676 421 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 U3.44-201ENST00000458938 192 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 TOMM22P6-201ENST00000465035 409 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 AC098869.1-201ENST00000481627 292 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 AC097462.2-201ENST00000504623 481 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 RNU6-1012P-201ENST00000516606 109 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 Y_RNA.700-201ENST00000516806 100 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 MRPS36P4-201ENST00000534436 298 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 MIR4300-201ENST00000581016 96 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 MIR4325-201ENST00000583049 90 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 AC010928.2-201ENST00000588017 287 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 U4.6-201ENST00000621618 127 ntBASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC87Q9NVE4 AL672296.1-201ENST00000427780 2158 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 ZNF826P-207ENST00000622273 1910 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 RNU6-200P-201ENST00000364743 107 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 RNU1-100P-201ENST00000365255 165 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 Y_RNA.352-201ENST00000365439 102 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 SNORD116-20-201ENST00000384529 92 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AL590135.1-201ENST00000422215 156 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 Z82188.1-201ENST00000436709 154 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 RN7SKP272-201ENST00000516988 232 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AC073410.2-201ENST00000603240 332 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AC240442.1-201ENST00000616055 283 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 AP001148.1-201ENST00000624124 2359 ntBASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC87Q9NVE4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 RNU6-1301P-201ENST00000362724 104 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 RNU6-1035P-201ENST00000384477 107 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 RPL23AP95-201ENST00000426806 265 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 NDUFB1P1-201ENST00000435191 180 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AL031659.1-201ENST00000447075 539 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AC093663.1-201ENST00000497190 394 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 RNU6-111P-201ENST00000517179 105 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AC022868.1-201ENST00000517767 391 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AC011602.1-201ENST00000546484 331 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 EIF4BP1-201ENST00000554881 351 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 AC097372.5-201ENST00000623665 376 ntBASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC87Q9NVE4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC87Q9NVE4 AL133412.1-201ENST00000380194 2992 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms