Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CYCSP26-201ENST00000534107 320 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC078814.3-201ENST00000553036 491 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AL161423.1-201ENST00000613700 262 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC073534.2-201ENST00000620377 381 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC002543.1-201ENST00000299783 1954 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC016717.2-201ENST00000609089 5141 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.15□□□□□ -2.07
DDX28Q9NUL7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 SNORA46.1-201ENST00000391069 153 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 RN7SKP158-201ENST00000410453 326 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AL606489.2-201ENST00000433886 234 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC124916.1-201ENST00000444020 547 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 PSPHP1-201ENST00000450062 261 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 RNU7-167P-201ENST00000459160 62 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 MTND4P7-201ENST00000523876 130 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AL138976.2-201ENST00000563989 694 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AP001330.5-201ENST00000607176 411 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC067747.1-201ENST00000608026 250 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 Z82243.1-201ENST00000609432 473 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC104073.3-201ENST00000610942 955 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC139792.3-201ENST00000623525 224 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 CTSLP2-204ENST00000629029 392 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
DDX28Q9NUL7 MTND4P1-201ENST00000457501 1466 ntBASIC2.14□□□□□ -2.07
DDX28Q9NUL7 AC069528.2-201ENST00000624849 1991 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 MIR21-201ENST00000362134 72 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 RNU6-655P-201ENST00000362858 107 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.194-201ENST00000363985 102 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.481-201ENST00000384373 102 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 MIR561-201ENST00000385216 97 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AL359511.1-201ENST00000402970 211 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 RNU2-16P-201ENST00000410712 136 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 SNORD56-201ENST00000413522 71 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 RPS3P1-201ENST00000456781 192 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC068781.1-201ENST00000488231 618 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC090255.1-201ENST00000495779 349 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 ANXA2P1-201ENST00000505539 926 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 SNORA40.12-201ENST00000516329 111 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 SNORA48.11-201ENST00000517015 89 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC080013.6-201ENST00000606185 215 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AC002044.1-201ENST00000606707 158 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 U2.17-201ENST00000611454 95 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AL158209.2-201ENST00000619266 216 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AL159153.1-201ENST00000619688 317 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 AL354685.2-201ENST00000448218 1447 ntBASIC2.13□□□□□ -2.07
DDX28Q9NUL7 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.13□□□□□ -2.07
DDX28Q9NUL7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RNA5SP432-201ENST00000362480 116 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RNU6-1210P-201ENST00000363775 107 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RNU6-105P-201ENST00000363909 104 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RNA5SP37-201ENST00000365420 130 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RNU1-148P-201ENST00000384472 162 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 CBX3P9-201ENST00000402326 552 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RPL30P12-201ENST00000474666 353 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AL121594.1-201ENST00000475906 575 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 MTND2P33-201ENST00000506452 1031 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC105313.1-201ENST00000509121 353 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 MIR514B-201ENST00000516774 80 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 RNU6-586P-201ENST00000517265 104 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC069113.1-201ENST00000517763 267 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC104383.1-201ENST00000530297 370 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 IMMP1LP2-201ENST00000552954 492 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC008749.1-201ENST00000597650 306 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AL136363.2-201ENST00000604173 851 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC007621.1-201ENST00000604544 437 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 AC097065.2-201ENST00000608159 533 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 uc_338.34-201ENST00000617467 174 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 MIR1291-201ENST00000627649 87 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 MIR6863-201ENST00000636112 90 ntBASIC2.12□□□□□ -2.07
DDX28Q9NUL7 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.11□□□□□ -2.07
DDX28Q9NUL7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms