Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC010525.2-201ENST00000590920 195 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC092747.3-201ENST00000603769 301 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AL121917.1-203ENST00000605534 577 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC024581.2-201ENST00000619986 252 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AC244517.12-201ENST00000623581 663 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 MIR7157-201ENST00000635801 60 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LIME1Q9H400 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC027514.1-201ENST00000588561 1603 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 MTND5P30-201ENST00000452896 1731 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 RNU5E-7P-201ENST00000365290 117 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 RNU1-109P-201ENST00000383960 147 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
LIME1Q9H400 SNORD115-47-201ENST00000391226 86 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 MIR1277-201ENST00000408536 78 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 RNU4-26P-201ENST00000410270 107 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 SNORD56-201ENST00000413522 71 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.17□□□□□ -2.06
LIME1Q9H400 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
LIME1Q9H400 HMGN2P3-201ENST00000433603 273 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 HMGN2P5-201ENST00000436882 273 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 HMGB1P31-201ENST00000437242 427 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 AC011816.1-201ENST00000441346 546 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.17□□□□□ -2.06
LIME1Q9H400 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
LIME1Q9H400 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.17□□□□□ -2.06
LIME1Q9H400 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.17□□□□□ -2.06
LIME1Q9H400 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.17□□□□□ -2.06
LIME1Q9H400 AC069113.1-201ENST00000517763 267 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.17□□□□□ -2.06
LIME1Q9H400 MTND1P35-201ENST00000526739 508 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.17□□□□□ -2.06
LIME1Q9H400 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.17□□□□□ -2.06
LIME1Q9H400 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
LIME1Q9H400 DEFB122-202ENST00000569013 197 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 MIR3616-201ENST00000584070 92 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
LIME1Q9H400 AC024614.3-201ENST00000637860 256 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
LIME1Q9H400 MTND4P5-201ENST00000435821 1374 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.17□□□□□ -2.06
LIME1Q9H400 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.17□□□□□ -2.06
LIME1Q9H400 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
LIME1Q9H400 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
LIME1Q9H400 RBBP8P1-201ENST00000449447 1844 ntBASIC2.17□□□□□ -2.06
LIME1Q9H400 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.16□□□□□ -2.06
LIME1Q9H400 Z82195.2-201ENST00000612348 18351 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 MIR6073-201ENST00000352083 89 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 VTRNA1-1-201ENST00000363120 99 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIME1Q9H400 SNORD116-20-201ENST00000384529 92 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RNA5SP492-201ENST00000411330 114 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AC007064.1-201ENST00000412238 351 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.16□□□□□ -2.06
LIME1Q9H400 DPH3P2-201ENST00000422618 250 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AC092427.1-202ENST00000430569 476 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AL365400.1-201ENST00000431854 640 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AL441985.1-201ENST00000457727 251 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RNU7-138P-201ENST00000459479 64 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RNU6-991P-201ENST00000516168 107 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RNU6-1038P-201ENST00000516516 104 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RN7SKP40-201ENST00000517211 242 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AC109479.2-201ENST00000517842 174 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 CKS1BP7-201ENST00000522230 235 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AC090897.2-201ENST00000581715 130 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 RPS15AP11-201ENST00000594193 385 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AC021646.1-201ENST00000605469 484 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AC104458.1-201ENST00000608243 463 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 Z82243.1-201ENST00000609432 473 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 AC092794.1-201ENST00000612734 582 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.16□□□□□ -2.06
LIME1Q9H400 AC080128.1-201ENST00000474389 1917 ntBASIC2.16□□□□□ -2.06
LIME1Q9H400 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIME1Q9H400 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.15□□□□□ -2.06
LIME1Q9H400 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.06
LIME1Q9H400 RNU6-37P-201ENST00000362692 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-1010P-201ENST00000362757 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-486P-201ENST00000363116 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-105P-201ENST00000363909 104 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-11P-201ENST00000364234 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-25P-201ENST00000383873 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-1-201ENST00000383898 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-48P-201ENST00000384161 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-36P-201ENST00000384172 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-4P-201ENST00000384205 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-5P-201ENST00000384238 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-3P-201ENST00000384314 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-16P-201ENST00000384385 107 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms