Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
VPS39Q96JC1 AP003392.2-201ENST00000527269 208 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AP005435.4-201ENST00000529514 284 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS39Q96JC1 MIR4703-201ENST00000577728 79 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC080013.6-201ENST00000606185 215 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC008536.2-201ENST00000607284 349 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AC007684.1-201ENST00000609671 477 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AL773524.1-201ENST00000614065 229 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AL590808.1-201ENST00000618696 141 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.08□□□□□ -2.08
VPS39Q96JC1 AL356432.1-201ENST00000405809 419 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 RNU2-66P-201ENST00000410650 161 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS39Q96JC1 AL596276.1-201ENST00000434465 418 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 MTND1P18-201ENST00000448191 573 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 NDUFB1P2-201ENST00000449477 176 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS39Q96JC1 AC108078.1-201ENST00000508073 725 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 MTCO3P7-201ENST00000510008 774 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 AC008413.1-201ENST00000511864 177 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.07□□□□□ -2.08
VPS39Q96JC1 NBR2-204ENST00000587322 63 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 AC068790.2-201ENST00000602601 557 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 AL138889.2-201ENST00000603883 242 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 APOOP1-201ENST00000604695 592 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 AC048344.4-201ENST00000619744 527 ntBASIC2.07□□□□□ -2.08
VPS39Q96JC1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS39Q96JC1 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.07□□□□□ -2.08
VPS39Q96JC1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
VPS39Q96JC1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC009487.4-201ENST00000624969 3585 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 RNA5SP138-201ENST00000365098 114 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 RNU6-45P-201ENST00000384471 107 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 HMGB3P2-201ENST00000411913 584 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 USP9YP8-201ENST00000441913 500 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 MTCO2P18-201ENST00000457151 658 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC091133.4-201ENST00000511142 308 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 RN7SKP219-201ENST00000516825 296 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 BNIP3P6-201ENST00000549284 499 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC087683.1-201ENST00000591187 441 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC091805.2-201ENST00000603848 235 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC098657.3-201ENST00000620434 263 ntBASIC2.06□□□□□ -2.08
VPS39Q96JC1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
VPS39Q96JC1 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
VPS39Q96JC1 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 RNU6-529P-201ENST00000363383 104 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 Y_RNA.296-201ENST00000364930 108 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 Y_RNA.582-201ENST00000391023 95 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 RNU6-1158P-201ENST00000391167 107 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 RNU6-387P-201ENST00000411331 105 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC244636.1-201ENST00000421152 228 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 AL589823.1-201ENST00000429577 183 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC073464.1-201ENST00000429823 534 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC002486.1-201ENST00000435098 391 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 RNU6-405P-201ENST00000516637 110 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
VPS39Q96JC1 AP000763.2-201ENST00000540641 163 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC008945.2-201ENST00000606056 604 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS39Q96JC1 AC090517.3-201ENST00000625170 141 ntBASIC2.05□□□□□ -2.08
VPS39Q96JC1 Y_RNA.1-201ENST00000352915 104 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-655P-201ENST00000362858 107 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-1120P-201ENST00000362988 108 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 Y_RNA.436-201ENST00000384097 102 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-1103P-201ENST00000384150 107 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-622P-201ENST00000384272 103 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-1127P-201ENST00000384580 107 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 MIR29C-201ENST00000385231 88 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 SNORA16.2-201ENST00000390991 127 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 SNORD70.1-201ENST00000391007 85 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-903P-201ENST00000391270 109 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNA5SP425-201ENST00000410336 112 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 RNU6-607P-201ENST00000411283 108 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.04□□□□□ -2.08
VPS39Q96JC1 MTND5P26-201ENST00000426018 1752 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS39Q96JC1 AC010975.2-201ENST00000427781 588 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AL606489.2-201ENST00000433886 234 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.04□□□□□ -2.08
VPS39Q96JC1 MTND2P33-201ENST00000506452 1031 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms