Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.51-201ENST00000362725 102 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 SNORD114-19-201ENST00000363072 75 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 RNU6-1119P-201ENST00000384349 108 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.510-201ENST00000384511 114 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 RNU6-1274P-201ENST00000384557 107 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 SNORD70.1-201ENST00000391007 85 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 RNA5SP425-201ENST00000410336 112 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC027124.2-201ENST00000428249 105 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC073415.1-201ENST00000449240 153 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AL356010.1-201ENST00000456364 102 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 SCARNA18-201ENST00000459004 134 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC117503.1-201ENST00000472241 394 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 RPL30P12-201ENST00000474666 353 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC108078.1-201ENST00000508073 725 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 RNU2-53P-201ENST00000516257 147 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC007375.1-201ENST00000554513 578 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 MIR3126-201ENST00000577443 74 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 MIR5692A1-201ENST00000580523 69 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC078795.2-201ENST00000602835 1252 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AL355297.2-201ENST00000604792 129 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC002044.1-201ENST00000606707 158 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC072046.2-201ENST00000618366 268 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 HAUS6P2-201ENST00000433254 2404 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 AC008555.8-201ENST00000623602 2168 ntBASIC1.71□□□□□ -2.14
CCDC54Q8NEL0 ZNF702P-202ENST00000434269 1966 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC138393.1-203ENST00000327086 343 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNU6-552P-201ENST00000362869 119 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNU6-1159P-201ENST00000362933 107 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNU6-428P-201ENST00000362942 107 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNU6-944P-201ENST00000364023 107 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNY3P9-201ENST00000384727 106 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNU2-23P-201ENST00000410545 195 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 SNORD56-201ENST00000413522 71 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL445646.1-201ENST00000431784 216 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL353689.1-201ENST00000438895 199 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL161788.1-201ENST00000441805 169 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNU7-180P-201ENST00000459240 63 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 snoU13.14-201ENST00000459372 104 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AP001486.1-201ENST00000463339 476 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 MTND2P33-201ENST00000506452 1031 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 MTCO3P7-201ENST00000510008 774 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 MTND2P38-201ENST00000522536 667 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 IMMP1LP2-201ENST00000552954 492 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 MIR4299-201ENST00000577899 72 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 MIR4424-201ENST00000585257 86 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC073410.2-201ENST00000603240 332 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC005034.5-201ENST00000604219 466 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 Z82243.1-201ENST00000609432 473 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC068792.1-201ENST00000621354 417 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 AC022418.1-201ENST00000624118 445 ntBASIC1.7□□□□□ -2.14
CCDC54Q8NEL0 RNA5SP276-201ENST00000362580 94 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 RNU6-1120P-201ENST00000362988 108 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 RNU6-393P-201ENST00000384475 107 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 RNU4-46P-201ENST00000410818 138 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 BTF3L4P1-201ENST00000413813 468 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 EDDM3CP-201ENST00000415977 425 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC096638.1-201ENST00000444678 216 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 MTND1P29-201ENST00000448112 647 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 RPL23AP3-201ENST00000453844 468 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AL441985.1-201ENST00000457727 251 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC107393.1-201ENST00000512403 346 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 SNORA48.11-201ENST00000517015 89 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC109329.1-201ENST00000518744 317 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 HIF1AP1-201ENST00000553642 175 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 AC074050.1-201ENST00000563247 211 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 MIR3122-201ENST00000577243 73 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 MIR5089-201ENST00000580047 84 ntBASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC54Q8NEL0 uc_338.15-201ENST00000615470 191 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms