Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RPL26P26-201ENST00000480251 434 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.64□□□□□ -2.31
USP54Q70EL1 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.64□□□□□ -2.31
USP54Q70EL1 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.64□□□□□ -2.31
USP54Q70EL1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC0.64□□□□□ -2.31
USP54Q70EL1 HIGD1AP17-201ENST00000554576 276 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 AC019288.1-201ENST00000557918 224 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.64□□□□□ -2.31
USP54Q70EL1 AC112220.3-201ENST00000605502 502 ntBASIC0.64□□□□□ -2.31
USP54Q70EL1 RNU6-222P-201ENST00000362438 107 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 RNU6-112P-201ENST00000363599 104 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 Y_RNA.234-201ENST00000364409 97 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 SNORA29-201ENST00000384183 140 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 RNA5SP63-201ENST00000391225 112 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 SNRPEP7-201ENST00000438350 220 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AL163195.1-201ENST00000496941 348 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 RNU6-583P-201ENST00000516012 92 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AC023632.1-201ENST00000518463 375 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.63□□□□□ -2.31
USP54Q70EL1 SNRPGP1-201ENST00000553864 222 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC0.63□□□□□ -2.31
USP54Q70EL1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.63□□□□□ -2.31
USP54Q70EL1 AC137800.2-201ENST00000574375 120 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AC073544.2-201ENST00000601155 540 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AC112220.2-201ENST00000605513 533 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AC068787.1-201ENST00000623908 691 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 AC100821.1-201ENST00000523153 2479 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 CDR1-202ENST00000625883 1485 ntBASIC0.63□□□□□ -2.31
USP54Q70EL1 RNU6-1010P-201ENST00000362757 107 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 CBX3P9-201ENST00000402326 552 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AL161935.2-201ENST00000414627 60 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 EIF1P1-201ENST00000421436 341 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AC104651.1-201ENST00000427559 735 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 RNU6-322P-201ENST00000516010 103 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 RNU6-1102P-201ENST00000516149 96 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 RNU7-40P-201ENST00000516397 64 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.62□□□□□ -2.31
USP54Q70EL1 ZNF92P2-201ENST00000600543 1059 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AL445435.1-201ENST00000604232 665 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AL355472.4-201ENST00000610233 626 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 MTND4P12-201ENST00000498999 1377 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
USP54Q70EL1 RNU6-743P-201ENST00000364151 106 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 SNORA40C-201ENST00000391285 128 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AC069282.1-201ENST00000411911 526 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.62□□□□□ -2.31
USP54Q70EL1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
USP54Q70EL1 RPL31P35-201ENST00000431058 377 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.62□□□□□ -2.31
USP54Q70EL1 AL096829.2-201ENST00000446582 742 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 MTND1P31-201ENST00000449206 961 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
USP54Q70EL1 RPL18AP17-201ENST00000455326 198 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 HAR1A.1-201ENST00000459583 118 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 RPL39P36-201ENST00000490784 156 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 LINC00557-201ENST00000563184 1279 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AC122134.1-202ENST00000569111 1201 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 MIR3912-201ENST00000577566 105 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 MZT1P2-201ENST00000604387 248 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 AC009033.1-201ENST00000624279 431 ntBASIC0.62□□□□□ -2.31
USP54Q70EL1 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
USP54Q70EL1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
USP54Q70EL1 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
USP54Q70EL1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
USP54Q70EL1 RNU6-622P-201ENST00000384272 103 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 AL606490.4-201ENST00000423117 127 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 C8orf59P1-201ENST00000429930 303 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 MTND5P14-201ENST00000441481 1267 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
USP54Q70EL1 SNORA31.3-201ENST00000516029 96 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 AP003392.2-201ENST00000527269 208 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 AC018630.3-201ENST00000542637 96 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 AC012414.6-201ENST00000568241 401 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 MIR3169-201ENST00000578032 83 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 MIR4661-201ENST00000582720 75 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 MIR4653-201ENST00000585107 83 ntBASIC0.61□□□□□ -2.31
USP54Q70EL1 RNU5B-1-201ENST00000363286 116 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 SNORA25-201ENST00000384384 134 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 RNA5SP390-201ENST00000410191 113 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.6□□□□□ -2.31
USP54Q70EL1 AC027644.1-201ENST00000419595 298 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.6□□□□□ -2.31
USP54Q70EL1 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.6□□□□□ -2.31
USP54Q70EL1 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.6□□□□□ -2.31
USP54Q70EL1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.6□□□□□ -2.31
USP54Q70EL1 HSPE1P13-201ENST00000451143 297 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 RPL30P1-201ENST00000488676 339 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.6□□□□□ -2.31
USP54Q70EL1 SCARNA16.2-201ENST00000516520 172 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.6□□□□□ -2.31
USP54Q70EL1 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.6□□□□□ -2.31
USP54Q70EL1 AC010975.3-201ENST00000618727 978 ntBASIC0.6□□□□□ -2.31
USP54Q70EL1 RNA5SP327-201ENST00000362494 101 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 MIR29B2-201ENST00000385055 81 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 Y_RNA.597-201ENST00000410463 100 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 RNU2-23P-201ENST00000410545 195 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 AC009518.2-201ENST00000418056 731 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 AC083875.1-201ENST00000419509 405 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 RAC1P6-201ENST00000423911 575 ntBASIC0.59□□□□□ -2.31
USP54Q70EL1 AC000111.3-201ENST00000433478 193 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms