Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.188-201ENST00000363952 111 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 RNU4-50P-201ENST00000364361 141 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 RNU4-9P-201ENST00000364951 139 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 SNORA63.7-201ENST00000365579 123 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 Y_RNA.471-201ENST00000384312 102 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 MIR3074-201ENST00000384885 81 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 MIR200C-201ENST00000384980 68 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXA4Q00056 U3.39-201ENST00000408569 239 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 RHEBP3-201ENST00000411920 351 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXA4Q00056 CYCSP4-201ENST00000429682 331 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 USP9YP16-201ENST00000430287 407 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AC108059.2-201ENST00000434626 151 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXA4Q00056 AL714022.1-201ENST00000439897 151 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AL353705.4-201ENST00000449661 238 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 USP9YP23-201ENST00000455085 407 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AC010099.1-201ENST00000455434 375 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 snoU13.30-201ENST00000458951 104 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 RPL30P14-201ENST00000482744 348 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AP001025.1-201ENST00000486139 332 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXA4Q00056 Y_RNA.706-201ENST00000516933 99 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 RNU6-1271P-201ENST00000517049 105 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXA4Q00056 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXA4Q00056 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA4Q00056 AC009163.5-201ENST00000575421 637 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AL390123.1-201ENST00000603216 237 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 AC019159.1-201ENST00000605094 187 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 SNORA51-201ENST00000606420 132 ntBASIC2.93□□□□□ -1.94
HOXA4Q00056 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA4Q00056 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA4Q00056 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXA4Q00056 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA4Q00056 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXA4Q00056 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
HOXA4Q00056 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 Y_RNA.19-201ENST00000362462 99 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 RNU6-770P-201ENST00000363929 105 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 CRP-203ENST00000368111 512 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXA4Q00056 RNU6-1286P-201ENST00000383871 107 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 Y_RNA.526-201ENST00000384572 110 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 Y_RNA.556-201ENST00000384677 113 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 MIR218-2-201ENST00000385006 110 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 RPL21P75-201ENST00000396599 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 RPL21P28-201ENST00000401418 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 Y_RNA.618-201ENST00000410949 107 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 RNU6-130P-201ENST00000411112 103 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXA4Q00056 AL590556.1-201ENST00000423231 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXA4Q00056 RPL21P40-201ENST00000428586 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 YME1L1P1-201ENST00000429435 297 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC009296.1-201ENST00000443146 155 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 FCF1P4-201ENST00000448326 183 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXA4Q00056 RPL21P39-201ENST00000463605 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 MED28P2-201ENST00000475771 317 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 RN7SL293P-201ENST00000481765 281 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC087190.1-201ENST00000484462 480 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC107032.1-201ENST00000485945 480 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC132942.1-201ENST00000486753 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC093591.1-201ENST00000491435 481 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 RPL21P16-201ENST00000495531 483 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC010469.2-201ENST00000496412 480 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 Y_RNA.668-201ENST00000516233 93 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXA4Q00056 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXA4Q00056 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXA4Q00056 RPL23AP88-201ENST00000605759 454 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 uc_338.32-201ENST00000615087 172 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC022149.2-201ENST00000621061 203 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 AC034229.5-201ENST00000624258 185 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXA4Q00056 SNORA43.4-201ENST00000629559 138 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXA4Q00056 MIR3199-2-201ENST00000636243 86 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.92□□□□□ -1.94
HOXA4Q00056 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXA4Q00056 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXA4Q00056 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXA4Q00056 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXA4Q00056 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXA4Q00056 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
HOXA4Q00056 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
HOXA4Q00056 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.91□□□□□ -1.94
HOXA4Q00056 Y_RNA.105-201ENST00000363182 111 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 Y_RNA.276-201ENST00000364732 109 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 SNORA29-201ENST00000384183 140 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 RNU6-472P-201ENST00000384299 107 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 RNU6-843P-201ENST00000384454 104 ntBASIC2.91□□□□□ -1.94
HOXA4Q00056 MIR32-201ENST00000384965 70 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms