Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC136601.2-201ENST00000604356 474 ntBASIC3.79□□□□□ -1.8
NKX3-2P78367 U4.7-201ENST00000638126 106 ntBASIC3.79□□□□□ -1.8
NKX3-2P78367 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
NKX3-2P78367 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-2P78367 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
NKX3-2P78367 AL355596.1-201ENST00000565399 3996 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 TNPO1P3-201ENST00000436471 2662 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-2P78367 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-2P78367 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-2P78367 RNU6-212P-201ENST00000362642 104 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 RNU6-227P-201ENST00000362865 103 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 RNU5E-7P-201ENST00000365290 117 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 MIR190B-201ENST00000401119 79 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 MIR1290-201ENST00000408735 78 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-2P78367 AC139712.2-201ENST00000424302 339 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 RPL23AP22-201ENST00000437556 453 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 AC109925.1-201ENST00000478069 331 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.78□□□□□ -1.8
NKX3-2P78367 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.78□□□□□ -1.8
NKX3-2P78367 TRAV28-201ENST00000557548 323 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 AC010900.2-201ENST00000604508 210 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 AP001282.2-201ENST00000616149 309 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.78□□□□□ -1.8
NKX3-2P78367 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
NKX3-2P78367 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 Y_RNA.27-201ENST00000362540 103 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 Y_RNA.84-201ENST00000363011 104 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 Y_RNA.515-201ENST00000384535 112 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 HMGN2P8-201ENST00000391458 268 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 RPS29P13-201ENST00000402041 169 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 RNU2-25P-201ENST00000411041 191 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 AC098614.2-201ENST00000426040 255 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 AL353705.1-201ENST00000433468 480 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 U8.22-201ENST00000459141 133 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 RN7SKP210-201ENST00000459176 261 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 RNU7-87P-201ENST00000459343 62 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 BTF3L4P4-201ENST00000506381 449 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-2P78367 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.77□□□□□ -1.81
NKX3-2P78367 AC067942.3-201ENST00000512025 362 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 RNU6-1073P-201ENST00000517182 106 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 RNA5SP291-201ENST00000517222 105 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.77□□□□□ -1.81
NKX3-2P78367 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.77□□□□□ -1.81
NKX3-2P78367 AL355877.2-201ENST00000603670 358 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 AL359693.1-201ENST00000614959 2407 ntBASIC3.77□□□□□ -1.81
NKX3-2P78367 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.77□□□□□ -1.81
NKX3-2P78367 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
NKX3-2P78367 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NKX3-2P78367 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-2P78367 AC007256.1-201ENST00000392253 2765 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
NKX3-2P78367 AC007785.2-201ENST00000598627 1916 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 MAPK10-373ENST00000641983 6772 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 RNU6-78P-201ENST00000362897 107 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 MIR325-201ENST00000385260 98 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
NKX3-2P78367 RPL21P75-201ENST00000396599 483 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 RPL21P28-201ENST00000401418 483 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 RNU6-1203P-201ENST00000410703 110 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-2P78367 AL590556.1-201ENST00000423231 483 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC009237.8-201ENST00000445492 379 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 RPL21P39-201ENST00000463605 483 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC087190.1-201ENST00000484462 480 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC107032.1-201ENST00000485945 480 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC132942.1-201ENST00000486753 483 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC093591.1-201ENST00000491435 481 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 RPL21P16-201ENST00000495531 483 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC078918.1-201ENST00000498515 228 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.76□□□□□ -1.81
NKX3-2P78367 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-2P78367 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.76□□□□□ -1.81
NKX3-2P78367 RNU6-138P-201ENST00000515952 107 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AL442163.3-201ENST00000554110 156 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.76□□□□□ -1.81
NKX3-2P78367 AC099506.2-201ENST00000623074 221 ntBASIC3.76□□□□□ -1.81
NKX3-2P78367 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-2P78367 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-2P78367 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.75□□□□□ -1.81
NKX3-2P78367 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-2P78367 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-2P78367 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-2P78367 SNORA31-201ENST00000362607 130 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 snoU2_19.2-201ENST00000363024 80 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms