Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.79□□□□□ -1.8
RNF4P78317 SNORA31.16-201ENST00000516773 139 ntBASIC3.79□□□□□ -1.8
RNF4P78317 RNU7-143P-201ENST00000516781 65 ntBASIC3.79□□□□□ -1.8
RNF4P78317 HIGD1AP1-201ENST00000550979 275 ntBASIC3.79□□□□□ -1.8
RNF4P78317 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.79□□□□□ -1.8
RNF4P78317 AC090897.2-201ENST00000581715 130 ntBASIC3.79□□□□□ -1.8
RNF4P78317 MIR5684-201ENST00000585074 65 ntBASIC3.79□□□□□ -1.8
RNF4P78317 AC037487.3-201ENST00000606668 112 ntBASIC3.79□□□□□ -1.8
RNF4P78317 IGHVIII-44-202ENST00000636235 289 ntBASIC3.79□□□□□ -1.8
RNF4P78317 AC007656.2-201ENST00000624902 4547 ntBASIC3.79□□□□□ -1.8
RNF4P78317 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.79□□□□□ -1.8
RNF4P78317 AC092268.1-201ENST00000342691 405 ntBASIC3.78□□□□□ -1.8
RNF4P78317 MIR411-201ENST00000362239 96 ntBASIC3.78□□□□□ -1.8
RNF4P78317 RNU6-1159P-201ENST00000362933 107 ntBASIC3.78□□□□□ -1.8
RNF4P78317 RNU6-774P-201ENST00000363238 107 ntBASIC3.78□□□□□ -1.8
RNF4P78317 RNU6-740P-201ENST00000364734 105 ntBASIC3.78□□□□□ -1.8
RNF4P78317 RNU6-886P-201ENST00000384319 105 ntBASIC3.78□□□□□ -1.8
RNF4P78317 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
RNF4P78317 AL591034.1-201ENST00000407447 340 ntBASIC3.78□□□□□ -1.8
RNF4P78317 RNU6-651P-201ENST00000411040 105 ntBASIC3.78□□□□□ -1.8
RNF4P78317 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.78□□□□□ -1.8
RNF4P78317 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.78□□□□□ -1.8
RNF4P78317 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.78□□□□□ -1.8
RNF4P78317 AC104332.1-201ENST00000440471 797 ntBASIC3.78□□□□□ -1.8
RNF4P78317 AC010095.1-201ENST00000443543 144 ntBASIC3.78□□□□□ -1.8
RNF4P78317 RN7SL585P-201ENST00000470538 280 ntBASIC3.78□□□□□ -1.8
RNF4P78317 AC006517.1-201ENST00000480485 328 ntBASIC3.78□□□□□ -1.8
RNF4P78317 AC006499.6-201ENST00000511169 607 ntBASIC3.78□□□□□ -1.8
RNF4P78317 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.78□□□□□ -1.8
RNF4P78317 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.78□□□□□ -1.8
RNF4P78317 AK6P2-201ENST00000549020 471 ntBASIC3.78□□□□□ -1.8
RNF4P78317 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.78□□□□□ -1.8
RNF4P78317 AC025627.2-201ENST00000576220 160 ntBASIC3.78□□□□□ -1.8
RNF4P78317 MIR3160-1-201ENST00000577972 85 ntBASIC3.78□□□□□ -1.8
RNF4P78317 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.78□□□□□ -1.8
RNF4P78317 MIR3609-201ENST00000582661 80 ntBASIC3.78□□□□□ -1.8
RNF4P78317 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
RNF4P78317 AL078605.1-201ENST00000603529 500 ntBASIC3.78□□□□□ -1.8
RNF4P78317 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.78□□□□□ -1.8
RNF4P78317 MIR3199-2-201ENST00000636243 86 ntBASIC3.78□□□□□ -1.8
RNF4P78317 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
RNF4P78317 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
RNF4P78317 FAM35DP-201ENST00000323387 2712 ntBASIC3.78□□□□□ -1.8
RNF4P78317 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
RNF4P78317 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
RNF4P78317 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.77□□□□□ -1.81
RNF4P78317 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
RNF4P78317 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
RNF4P78317 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
RNF4P78317 MIR372-201ENST00000362225 67 ntBASIC3.77□□□□□ -1.81
RNF4P78317 SNORA25.1-201ENST00000362326 128 ntBASIC3.77□□□□□ -1.81
RNF4P78317 SNORD35B-201ENST00000363660 87 ntBASIC3.77□□□□□ -1.81
RNF4P78317 RNU6-1175P-201ENST00000365200 107 ntBASIC3.77□□□□□ -1.81
RNF4P78317 RNU6-326P-201ENST00000365480 107 ntBASIC3.77□□□□□ -1.81
RNF4P78317 U1.1-201ENST00000384101 164 ntBASIC3.77□□□□□ -1.81
RNF4P78317 RNU6-1145P-201ENST00000384246 107 ntBASIC3.77□□□□□ -1.81
RNF4P78317 Y_RNA.570-201ENST00000384750 101 ntBASIC3.77□□□□□ -1.81
RNF4P78317 RPL21P65-201ENST00000406094 466 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AC019205.3-201ENST00000424573 156 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AL358075.3-201ENST00000426289 226 ntBASIC3.77□□□□□ -1.81
RNF4P78317 RPL23AP82-202ENST00000427528 469 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AC078809.1-201ENST00000427601 140 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AL161651.1-201ENST00000440882 223 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.77□□□□□ -1.81
RNF4P78317 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.77□□□□□ -1.81
RNF4P78317 SNORD116-28-201ENST00000516123 91 ntBASIC3.77□□□□□ -1.81
RNF4P78317 CBX3P4-201ENST00000538909 354 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.77□□□□□ -1.81
RNF4P78317 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.77□□□□□ -1.81
RNF4P78317 KLKP1-201ENST00000595979 403 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AL391261.4-201ENST00000616012 481 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AC008785.1-201ENST00000624475 456 ntBASIC3.77□□□□□ -1.81
RNF4P78317 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
RNF4P78317 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
RNF4P78317 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.77□□□□□ -1.81
RNF4P78317 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.77□□□□□ -1.81
RNF4P78317 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.77□□□□□ -1.81
RNF4P78317 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
RNF4P78317 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.76□□□□□ -1.81
RNF4P78317 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.76□□□□□ -1.81
RNF4P78317 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
RNF4P78317 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.76□□□□□ -1.81
RNF4P78317 MIR423-201ENST00000362201 94 ntBASIC3.76□□□□□ -1.81
RNF4P78317 RNU6-1285P-201ENST00000363480 105 ntBASIC3.76□□□□□ -1.81
RNF4P78317 RNU6-137P-201ENST00000363680 108 ntBASIC3.76□□□□□ -1.81
RNF4P78317 SNORD115-8-201ENST00000363856 82 ntBASIC3.76□□□□□ -1.81
RNF4P78317 SNORD115-38-201ENST00000365037 82 ntBASIC3.76□□□□□ -1.81
RNF4P78317 Y_RNA.418-201ENST00000384029 102 ntBASIC3.76□□□□□ -1.81
RNF4P78317 RNU6-514P-201ENST00000384208 107 ntBASIC3.76□□□□□ -1.81
RNF4P78317 RNU6-622P-201ENST00000384272 103 ntBASIC3.76□□□□□ -1.81
RNF4P78317 MIR513A2-201ENST00000385249 127 ntBASIC3.76□□□□□ -1.81
RNF4P78317 PCNPP3-201ENST00000393579 471 ntBASIC3.76□□□□□ -1.81
RNF4P78317 AL133475.1-201ENST00000404414 305 ntBASIC3.76□□□□□ -1.81
RNF4P78317 Z98941.1-201ENST00000407764 100 ntBASIC3.76□□□□□ -1.81
RNF4P78317 AC012306.1-201ENST00000423267 114 ntBASIC3.76□□□□□ -1.81
RNF4P78317 AL117339.2-201ENST00000430475 180 ntBASIC3.76□□□□□ -1.81
RNF4P78317 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.76□□□□□ -1.81
RNF4P78317 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.76□□□□□ -1.81
RNF4P78317 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.76□□□□□ -1.81
RNF4P78317 MRPS10P1-201ENST00000448483 130 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms