Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL132822.1-201ENST00000617063 513 ntBASIC1.7□□□□□ -2.14
RFX3P48380 uc_338.11-201ENST00000619132 160 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AL359740.1-201ENST00000624340 592 ntBASIC1.7□□□□□ -2.14
RFX3P48380 U6.114-201ENST00000636407 96 ntBASIC1.7□□□□□ -2.14
RFX3P48380 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.7□□□□□ -2.14
RFX3P48380 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
RFX3P48380 RNU6-655P-201ENST00000362858 107 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RNU6-944P-201ENST00000364023 107 ntBASIC1.69□□□□□ -2.14
RFX3P48380 Y_RNA.367-201ENST00000365544 101 ntBASIC1.69□□□□□ -2.14
RFX3P48380 SNORA8-201ENST00000384574 139 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RNY3P10-201ENST00000384764 102 ntBASIC1.69□□□□□ -2.14
RFX3P48380 MIR454-201ENST00000390180 115 ntBASIC1.69□□□□□ -2.14
RFX3P48380 OR9R1P-201ENST00000412200 877 ntBASIC1.69□□□□□ -2.14
RFX3P48380 AC244636.1-201ENST00000421152 228 ntBASIC1.69□□□□□ -2.14
RFX3P48380 BX510359.4-201ENST00000423750 193 ntBASIC1.69□□□□□ -2.14
RFX3P48380 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.69□□□□□ -2.14
RFX3P48380 ISCA1P6-201ENST00000427740 390 ntBASIC1.69□□□□□ -2.14
RFX3P48380 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.69□□□□□ -2.14
RFX3P48380 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.69□□□□□ -2.14
RFX3P48380 PRELID3BP1-201ENST00000457142 540 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RNU1-86P-201ENST00000516108 154 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RNU1-107P-201ENST00000516617 154 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RNU6-548P-201ENST00000517083 115 ntBASIC1.69□□□□□ -2.14
RFX3P48380 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.69□□□□□ -2.14
RFX3P48380 BNIP3P6-201ENST00000549284 499 ntBASIC1.69□□□□□ -2.14
RFX3P48380 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.69□□□□□ -2.14
RFX3P48380 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.69□□□□□ -2.14
RFX3P48380 AC145350.1-201ENST00000567426 208 ntBASIC1.69□□□□□ -2.14
RFX3P48380 NIFKP6-201ENST00000598115 845 ntBASIC1.69□□□□□ -2.14
RFX3P48380 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.69□□□□□ -2.14
RFX3P48380 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.69□□□□□ -2.14
RFX3P48380 AC026585.1-201ENST00000619582 524 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RMST_7.1-201ENST00000621935 268 ntBASIC1.69□□□□□ -2.14
RFX3P48380 AC007792.1-201ENST00000623023 402 ntBASIC1.69□□□□□ -2.14
RFX3P48380 RNU6-1210P-201ENST00000363775 107 ntBASIC1.68□□□□□ -2.14
RFX3P48380 RNU6-546P-201ENST00000383991 107 ntBASIC1.68□□□□□ -2.14
RFX3P48380 SNORA26.8-201ENST00000391306 124 ntBASIC1.68□□□□□ -2.14
RFX3P48380 CBX3P9-201ENST00000402326 552 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AL356432.1-201ENST00000405809 419 ntBASIC1.68□□□□□ -2.14
RFX3P48380 RNU6-607P-201ENST00000411283 108 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.68□□□□□ -2.14
RFX3P48380 PGBD4P6-201ENST00000421501 610 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC092447.3-201ENST00000426027 686 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.68□□□□□ -2.14
RFX3P48380 SNRPGP9-201ENST00000456025 225 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC022364.2-201ENST00000457963 554 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.68□□□□□ -2.14
RFX3P48380 SNORD27.1-201ENST00000516319 72 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.68□□□□□ -2.14
RFX3P48380 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC109446.2-201ENST00000567872 497 ntBASIC1.68□□□□□ -2.14
RFX3P48380 MIR4419B-201ENST00000577260 68 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC009318.2-201ENST00000610917 651 ntBASIC1.68□□□□□ -2.14
RFX3P48380 AC091931.1-201ENST00000623488 728 ntBASIC1.68□□□□□ -2.14
RFX3P48380 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.67□□□□□ -2.14
RFX3P48380 RNU6-74P-201ENST00000384235 107 ntBASIC1.67□□□□□ -2.14
RFX3P48380 RNU6-611P-201ENST00000384276 104 ntBASIC1.67□□□□□ -2.14
RFX3P48380 U8.13-201ENST00000390842 128 ntBASIC1.67□□□□□ -2.14
RFX3P48380 BTF3L4P1-201ENST00000413813 468 ntBASIC1.67□□□□□ -2.14
RFX3P48380 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 HMGB1P31-201ENST00000437242 427 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC007677.1-201ENST00000445757 515 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 AL353752.1-201ENST00000454946 260 ntBASIC1.67□□□□□ -2.14
RFX3P48380 RNU7-182P-201ENST00000459009 62 ntBASIC1.67□□□□□ -2.14
RFX3P48380 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 AC104564.1-201ENST00000493028 407 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 AC074344.1-201ENST00000512823 224 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.67□□□□□ -2.14
RFX3P48380 RNU6-295P-201ENST00000516901 104 ntBASIC1.67□□□□□ -2.14
RFX3P48380 RN7SKP256-201ENST00000517201 314 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.67□□□□□ -2.14
RFX3P48380 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.67□□□□□ -2.14
RFX3P48380 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.67□□□□□ -2.14
RFX3P48380 MIR3122-201ENST00000577243 73 ntBASIC1.67□□□□□ -2.14
RFX3P48380 Z94722.1-201ENST00000604328 474 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC064872.1-201ENST00000604823 1072 ntBASIC1.67□□□□□ -2.14
RFX3P48380 MIR98-201ENST00000606724 119 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC006566.1-201ENST00000608943 513 ntBASIC1.67□□□□□ -2.14
RFX3P48380 AC011155.2-201ENST00000623202 216 ntBASIC1.67□□□□□ -2.14
RFX3P48380 SEPT14P19-203ENST00000633205 211 ntBASIC1.67□□□□□ -2.14
RFX3P48380 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.66□□□□□ -2.14
RFX3P48380 AL356292.1-201ENST00000283110 373 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU6-1287P-201ENST00000362914 107 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU5E-7P-201ENST00000365290 117 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU6-116P-201ENST00000384042 109 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU6-1060P-201ENST00000384664 107 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU2-3P-201ENST00000410144 191 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RNU6-248P-201ENST00000410720 107 ntBASIC1.66□□□□□ -2.14
RFX3P48380 C1DP2-201ENST00000418167 426 ntBASIC1.66□□□□□ -2.14
RFX3P48380 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.66□□□□□ -2.14
RFX3P48380 MTND2P18-201ENST00000419962 1030 ntBASIC1.66□□□□□ -2.14
RFX3P48380 PIGFP2-201ENST00000421400 651 ntBASIC1.66□□□□□ -2.14
RFX3P48380 RPL31P63-201ENST00000422565 375 ntBASIC1.66□□□□□ -2.14
RFX3P48380 USP9YP18-201ENST00000425912 695 ntBASIC1.66□□□□□ -2.14
RFX3P48380 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.66□□□□□ -2.14
RFX3P48380 HSPE1P21-201ENST00000438283 308 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms